Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GNP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PG P PG N N N 0 -1.231 -0.295 7.212
2 O1G O O1G N N N 0 -1.759 1.078 7.063
3 O2G O O2G N N N 0 -2.158 -1.118 8.24
4 O3G O O3G N N N 0 0.274 -0.234 7.778
5 N3B N N3B N N N 0 -1.236 -1.064 5.714
6 PB P PB R N N 0 -0.252 -0.151 4.699
7 O1B O O1B N N N 0 -0.795 1.221 4.589
8 O2B O O2B N N N 0 1.237 -0.091 5.307
9 O3A O O3A N N N 0 -0.209 -0.83 3.24
10 PA P PA S N N 0 0.744 0.089 2.326
11 O1A O O1A N N N 0 0.185 1.458 2.252
12 O2A O O2A N N N 0 2.216 0.145 2.974
13 O5' O O5* N N N 0 0.832 -0.534 0.845
14 C5' C C5* N N N 0 1.688 0.322 0.086
15 C4' C C4* R N N 0 1.815 -0.217 -1.339
16 O4' O O4* N N N 0 0.524 -0.237 -1.986
17 C3' C C3* S N N 0 2.674 0.734 -2.202
18 O3' O O3* N N N 0 4.018 0.258 -2.285
19 C2' C C2* R N N 0 1.997 0.695 -3.592
20 O2' O O2* N N N 0 2.904 0.196 -4.577
21 C1' C C1* R N N 0 0.808 -0.272 -3.402
22 N9 N N9 N Y N 0 -0.352 0.188 -4.166
23 C8 C C8 N Y N 0 -1.315 1.051 -3.73
24 N7 N N7 N Y N 0 -2.196 1.24 -4.668
25 C5 C C5 N Y N 0 -1.853 0.512 -5.759
26 C6 C C6 N Y N 0 -2.423 0.33 -7.041
27 O6 O O6 N N N 0 -3.453 0.902 -7.354
28 N1 N N1 N Y N 0 -1.794 -0.489 -7.912
29 C2 C C2 N Y N 0 -0.646 -1.129 -7.549
30 N2 N N2 N N N 0 -0.033 -1.96 -8.453
31 N3 N N3 N Y N 0 -0.107 -0.968 -6.361
32 C4 C C4 N Y N 0 -0.67 -0.168 -5.449
33 HOG2 H 2HOG N N N 0 -2.127 -0.645 9.083
34 HOG3 H 3HOG N N N 0 0.579 -1.147 7.86
35 HNB3 H 3HNB N N N 0 -2.175 -0.988 5.353
36 HOB2 H 2HOB N N N 0 1.553 -1.004 5.362
37 HOA2 H 2HOA N N N 0 2.543 -0.764 3.004
38 H5'2 H 2H5* N N N 0 1.265 1.326 0.058
39 H5'1 H 1H5* N N N 0 2.673 0.356 0.551
40 H4' H H4* N N N 0 2.251 -1.216 -1.329
41 H3' H H3* N N N 0 2.652 1.744 -1.793
42 HO3' H *HO3 N N N 0 4.505 0.889 -2.833
43 H2' H H2* N N N 0 1.639 1.686 -3.871
44 HO2' H *HO2 N N N 0 3.651 0.81 -4.606
45 H1' H H1* N N N 0 1.087 -1.281 -3.708
46 H8 H H8 N N N 0 -1.341 1.509 -2.752
47 HN1 H HN1 N N N 0 -2.166 -0.63 -8.797
48 HN21 H 1HN2 N N N 0 0.786 -2.419 -8.21
49 HN22 H 2HN2 N N N 0 -0.421 -2.092 -9.332