Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : GNT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -1.721 1.017 -0.606
2 C2 C C2 N N N 0 -2.7 1.357 0.162
3 C3 C C3 R N N 0 -3.269 0.472 1.225
4 C4 C C4 N N N 0 -2.888 -0.978 1.016
5 C41 C C41 S N N 0 -1.455 -1.176 0.602
6 C42 C C42 S N N 0 -1.013 -0.295 -0.568
7 O5 O O5 N N N 0 -0.537 -0.846 1.652
8 C6 C C6 N Y N 0 1.815 -0.116 1.76
9 C7 C C7 N Y N 0 2.837 0.431 0.994
10 C8 C C8 N Y N 0 2.675 0.693 -0.344
11 C9 C C9 N N N 0 1.483 0.671 -2.493
12 N10 N N10 N N N 0 0.779 -0.348 -3.241
13 C11 C C11 N N N 0 -0.637 -0.272 -3.043
14 C12 C C12 N N N 0 -1.16 -1.051 -1.873
15 C13 C C13 N Y N 0 0.603 -0.369 1.106
16 C14 C C14 N Y N 0 0.455 -0.063 -0.252
17 C15 C C15 N Y N 0 1.468 0.432 -1.012
18 C16 C C16 N N N 0 3.325 -0.026 3.412
19 O17 O O17 N N N 0 1.986 -0.399 3.08
20 O18 O O18 N N N 0 -2.781 0.902 2.497
21 C19 C C19 N N N 0 1.021 -0.072 -4.663
22 H1 H H1 N N N 0 -1.387 1.74 -1.335
23 H42 H 2H4 N N N 0 -3.535 -1.4 0.247
24 H2 H H2 N N N 0 -3.134 2.337 0.03
25 H3 H H3 N N N 0 -4.356 0.559 1.214
26 H41A H 1H4 N N N 0 -3.06 -1.52 1.946
27 H41 H H41 N N N 0 -1.308 -2.218 0.318
28 H7 H H7 N N N 0 3.783 0.657 1.464
29 H8 H H8 N N N 0 3.501 1.113 -0.899
30 H91 H 1H9 N N N 0 1.021 1.637 -2.696
31 H92 H 2H9 N N N 0 2.519 0.703 -2.832
32 H111 H 1H11 N N N 0 -0.908 0.774 -2.907
33 H112 H 2H11 N N N 0 -1.129 -0.635 -3.945
34 H121 H 1H12 N N N 0 -2.216 -1.27 -2.038
35 H122 H 2H12 N N N 0 -0.614 -1.991 -1.801
36 H161 H 1H16 N N N 0 3.509 -0.235 4.466
37 H162 H 2H16 N N N 0 4.023 -0.597 2.801
38 H163 H 3H16 N N N 0 3.463 1.038 3.223
39 H18 H H18 N N N 0 -3.072 1.816 2.615
40 H191 H 1H19 N N N 0 0.547 0.87 -4.936
41 H192 H 2H19 N N N 0 2.094 -0.004 -4.843
42 H193 H 3H19 N N N 0 0.602 -0.877 -5.267