Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : GP6

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 2.177 0.673 6.005
2 N2 N N2 N N N 0 0.518 -0.64 6.962
3 C1 C C1 N N N 0 1.047 0.035 5.884
4 C2 C C2 N Y N 0 0.333 0.035 4.589
5 C3 C C3 N Y N 0 0.867 0.719 3.495
6 C4 C C4 N Y N 0 0.199 0.718 2.29
7 C5 C C5 N Y N 0 -1.005 0.037 2.163
8 C6 C C6 N Y N 0 -1.54 -0.644 3.25
9 C7 C C7 N Y N 0 -0.874 -0.651 4.456
10 N3 N N3 N N N 0 -1.68 0.037 0.941
11 C8 C C8 N N N 0 -0.983 0.063 -0.212
12 O1 O O1 N N N 0 0.229 -0.012 -0.192
13 N4 N N4 N N N 0 -1.632 0.174 -1.388
14 C9 C C9 N Y N 0 -0.921 0.087 -2.591
15 C10 C C10 N Y N 0 0.197 -0.731 -2.68
16 C11 C C11 N Y N 0 0.897 -0.815 -3.868
17 C12 C C12 N Y N 0 0.484 -0.085 -4.968
18 C13 C C13 N Y N 0 -0.629 0.731 -4.882
19 C14 C C14 N Y N 0 -1.336 0.814 -3.699
20 CL CL CL N N N 0 1.366 -0.193 -6.46
21 HN1 H HN1 N N N 0 2.55 1.148 5.245
22 HN21 H 1HN2 N N N 0 0.987 -0.641 7.811
23 HN22 H 2HN2 N N N 0 -0.324 -1.112 6.873
24 H3 H H3 N N N 0 1.803 1.249 3.594
25 H4 H H4 N N N 0 0.613 1.247 1.444
26 H6 H H6 N N N 0 -2.477 -1.173 3.148
27 H7 H H7 N N N 0 -1.29 -1.181 5.3
28 HN3 H HN3 N N N 0 -2.649 0.019 0.922
29 HN4 H HN4 N N N 0 -2.592 0.313 -1.402
30 H10 H H10 N N N 0 0.519 -1.3 -1.821
31 H11 H H11 N N N 0 1.766 -1.451 -3.937
32 H13 H H13 N N N 0 -0.949 1.3 -5.743
33 H14 H H14 N N N 0 -2.205 1.451 -3.632