Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GP7

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 114


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 0.878 -4.433 -0.522
2 C1 C C1 N N N 0 -0.72 -3.622 1.46
3 C2 C C2 R N N 0 -1.079 -2.347 2.225
4 O2 O O2 N N N 0 -1.714 -1.403 1.323
5 C3 C C3 N N N 0 0.193 -1.723 2.802
6 O3 O O3 N N N 0 1.153 -1.507 1.734
7 C11 C C11 N N N 0 2.332 -0.962 2.075
8 O11 O O11 N N N 0 2.554 -0.675 3.227
9 C12 C C12 N N N 0 3.378 -0.708 1.02
10 C13 C C13 N N N 0 4.616 -0.086 1.669
11 C14 C C14 N N N 0 5.678 0.171 0.598
12 C15 C C15 N N N 0 6.916 0.793 1.247
13 C16 C C16 N N N 0 7.978 1.051 0.176
14 C17 C C17 N N N 0 9.216 1.673 0.825
15 C18 C C18 N N N 0 10.278 1.93 -0.245
16 C19 C C19 N N N 0 11.517 2.552 0.403
17 O1P O O1P N N N 0 1.431 -5.553 0.272
18 C20 C C20 N N N 0 12.578 2.81 -0.667
19 C21 C C21 N N N 0 13.817 3.431 -0.018
20 C22 C C22 N N N 0 14.879 3.689 -1.089
21 C23 C C23 N N N 0 16.117 4.311 -0.44
22 C24 C C24 N N N 0 17.179 4.569 -1.511
23 C25 C C25 N N N 0 18.417 5.19 -0.862
24 O2P O O2P N N N 0 -0.283 -4.984 -1.491
25 C31 C C31 N N N 0 -3.051 -1.47 1.213
26 O31 O O31 N N N 0 -3.669 -2.289 1.851
27 C32 C C32 N N N 0 -3.78 -0.523 0.295
28 C33 C C33 N N N 0 -5.282 -0.808 0.356
29 C34 C C34 N N N 0 -6.022 0.154 -0.576
30 C35 C C35 N N N 0 -7.524 -0.132 -0.515
31 C36 C C36 N N N 0 -8.264 0.83 -1.446
32 C37 C C37 N N N 0 -9.766 0.544 -1.385
33 C38 C C38 N N N 0 -10.506 1.506 -2.317
34 C41 C C41 N N N 0 -14.303 1.906 -1.904
35 C39 C C39 N N N 0 -11.985 1.225 -2.257
36 O3P O O3P N N N 0 0.266 -3.323 0.471
37 C40 C C40 N N N 0 -12.823 2.187 -1.964
38 C42 C C42 N N N 0 -14.841 2.33 -0.562
39 C43 C C43 N N N 0 -15.845 3.169 -0.493
40 C44 C C44 N N N 0 -16.383 3.593 0.849
41 C45 C C45 N N N 0 -16.368 5.12 0.945
42 C46 C C46 N N N 0 -16.914 5.551 2.307
43 O4P O O4P N N N 0 2.049 -3.774 -1.408
44 C351 C C351 N N N 0 2.859 -4.528 -2.312
45 C361 C C361 N N N 0 3.869 -3.598 -2.989
46 H3 H H3 N N N 0 -0.05 -0.769 3.27
47 N1 N N1 N N N 0 4.799 -3.069 -1.982
48 H1 H H1 N N N 0 -0.325 -4.363 2.155
49 H1A H H1A N N N 0 -1.613 -4.018 0.976
50 H2 H H2 N N N 0 -1.764 -2.59 3.037
51 H3A H H3A N N N 0 0.622 -2.394 3.546
52 H12 H H12 N N N 0 3.651 -1.651 0.545
53 H12A H H12A N N N 0 2.979 -0.025 0.27
54 H13 H H13 N N N 0 4.343 0.856 2.144
55 H16 H H16 N N N 0 8.251 0.108 -0.298
56 H13A H H13A N N N 0 5.015 -0.769 2.42
57 H14 H H14 N N N 0 5.951 -0.771 0.123
58 H14A H H14A N N N 0 5.279 0.854 -0.152
59 H15 H H15 N N N 0 6.643 1.735 1.722
60 H15A H H15A N N N 0 7.315 0.11 1.998
61 H16A H H16A N N N 0 7.579 1.734 -0.574
62 H17 H H17 N N N 0 8.943 2.615 1.3
63 H17A H H17A N N N 0 9.615 0.99 1.576
64 H19A H H19A N N N 0 11.915 1.869 1.154
65 H18 H H18 N N N 0 10.552 0.988 -0.72
66 H18A H H18A N N N 0 9.88 2.613 -0.996
67 H19 H H19 N N N 0 11.243 3.494 0.878
68 H20 H H20 N N N 0 12.852 1.867 -1.142
69 H21 H H21 N N N 0 13.543 4.374 0.456
70 H20A H H20A N N N 0 12.18 3.492 -1.418
71 H21A H H21A N N N 0 14.215 2.749 0.732
72 H22 H H22 N N N 0 15.152 2.747 -1.564
73 H22A H H22A N N N 0 14.48 4.372 -1.839
74 H23 H H23 N N N 0 15.844 5.253 0.035
75 H25 H H25 N N N 0 19.174 5.374 -1.625
76 H23A H H23A N N N 0 16.516 3.628 0.31
77 H24 H H24 N N N 0 17.452 3.626 -1.986
78 H24A H H24A N N N 0 16.78 5.251 -2.261
79 H25A H H25A N N N 0 18.144 6.133 -0.387
80 H25B H H25B N N N 0 18.816 4.508 -0.112
81 H351 H H351 N N N 0 -0.692 -4.302 -2.043
82 H32 H H32 N N N 0 -3.592 0.504 0.609
83 H34 H H34 N N N 0 -5.834 1.18 -0.262
84 H32A H H32A N N N 0 -3.425 -0.661 -0.726
85 H33 H H33 N N N 0 -5.469 -1.835 0.042
86 H33A H H33A N N N 0 -5.637 -0.67 1.378
87 H34A H H34A N N N 0 -5.667 0.015 -1.597
88 H35 H H35 N N N 0 -7.711 -1.159 -0.828
89 H35A H H35A N N N 0 -7.879 0.006 0.507
90 H36 H H36 N N N 0 -8.076 1.856 -1.133
91 H36A H H36A N N N 0 -7.909 0.691 -2.468
92 H37 H H37 N N N 0 -9.953 -0.483 -1.699
93 H37A H H37A N N N 0 -10.121 0.683 -0.364
94 H38 H H38 N N N 0 -10.318 2.533 -2.003
95 H38A H H38A N N N 0 -10.151 1.367 -3.339
96 H39 H H39 N N N 0 -12.354 0.229 -2.457
97 H40 H H40 N N N 0 -12.454 3.183 -1.765
98 H41 H H41 N N N 0 -14.811 2.463 -2.691
99 H41A H H41A N N N 0 -14.476 0.839 -2.044
100 H42 H H42 N N N 0 -14.398 1.943 0.345
101 H43 H H43 N N N 0 -16.287 3.557 -1.4
102 H44 H H44 N N N 0 -17.405 3.232 0.961
103 H44A H H44A N N N 0 -15.76 3.174 1.639
104 H45 H H45 N N N 0 -15.346 5.482 0.832
105 H45A H H45A N N N 0 -16.991 5.54 0.154
106 H46 H H46 N N N 0 -16.904 6.639 2.375
107 H46A H H46A N N N 0 -17.937 5.19 2.42
108 H46B H H46B N N N 0 -16.292 5.132 3.097
109 H63 H H63 N N N 0 3.392 -5.304 -1.762
110 H64 H H64 N N N 0 2.226 -4.989 -3.069
111 H65 H H65 N N N 0 4.426 -4.154 -3.742
112 H66 H H66 N N N 0 3.34 -2.772 -3.464
113 H67 H H67 N N N 0 5.476 -2.452 -2.404
114 H68 H H68 N N N 0 4.3 -2.604 -1.238