Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GP8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -1.581 0.596 7.696
2 N2 N N2 N N N 0 -2.403 -1.301 6.64
3 C1 C C1 N N N 0 -1.592 -0.281 6.634
4 C2 C C2 N Y N 0 -0.683 -0.066 5.487
5 C3 C C3 N Y N 0 -0.693 -0.955 4.411
6 C4 C C4 N Y N 0 0.154 -0.752 3.344
7 C5 C C5 N Y N 0 1.02 0.336 3.339
8 C6 C C6 N Y N 0 1.031 1.223 4.41
9 C7 C C7 N Y N 0 0.182 1.028 5.477
10 N3 N N3 N N N 0 1.878 0.539 2.257
11 C8 C C8 N N N 0 1.49 0.189 1.015
12 O1 O O1 N N N 0 0.356 -0.203 0.82
13 N4 N N4 N N N 0 2.359 0.275 -0.011
14 C9 C C9 N Y N 0 1.928 0.01 -1.318
15 C10 C C10 N Y N 0 0.632 0.328 -1.699
16 C11 C C11 N Y N 0 0.208 0.068 -2.987
17 C12 C C12 N Y N 0 1.077 -0.511 -3.9
18 C13 C C13 N Y N 0 2.373 -0.828 -3.52
19 C14 C C14 N Y N 0 2.799 -0.564 -2.234
20 O2 O O2 N N N 0 0.659 -0.767 -5.168
21 C15 C C15 N Y N 0 -0.591 -0.249 -5.282
22 C16 C C16 N Y N 0 -0.764 1.068 -5.68
23 C17 C C17 N Y N 0 -2.037 1.592 -5.795
24 C18 C C18 N Y N 0 -3.139 0.805 -5.513
25 C19 C C19 N Y N 0 -2.969 -0.508 -5.116
26 C20 C C20 N Y N 0 -1.698 -1.039 -5.005
27 HN11 H 1HN1 N N N 0 -0.975 1.353 7.693
28 HN12 H 2HN1 N N N 0 -2.178 0.455 8.448
29 HN2 H HN2 N N N 0 -2.411 -1.919 5.892
30 H3 H H3 N N N 0 -1.364 -1.801 4.414
31 H4 H H4 N N N 0 0.148 -1.44 2.511
32 H6 H H6 N N N 0 1.704 2.068 4.403
33 H7 H H7 N N N 0 0.191 1.718 6.308
34 HN3 H HN3 N N N 0 2.753 0.931 2.399
35 HN4 H HN4 N N N 0 3.283 0.519 0.154
36 H10 H H10 N N N 0 -0.044 0.779 -0.989
37 H11 H H11 N N N 0 -0.8 0.316 -3.284
38 H13 H H13 N N N 0 3.049 -1.279 -4.231
39 H14 H H14 N N N 0 3.808 -0.811 -1.937
40 H16 H H16 N N N 0 0.094 1.684 -5.899
41 H17 H H17 N N N 0 -2.173 2.618 -6.104
42 H18 H H18 N N N 0 -4.133 1.217 -5.603
43 H19 H H19 N N N 0 -3.831 -1.12 -4.896
44 H20 H H20 N N N 0 -1.567 -2.065 -4.695