Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GSB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 2.492 -1.685 4.335
2 CA1 C CA1 S N N 0 3.28 -0.676 3.614
3 C1 C C1 N N N 0 4.171 0.053 4.586
4 O11 O O11 N N N 0 3.824 0.194 5.734
5 O12 O O12 N N N 0 5.349 0.547 4.175
6 CB1 C CB1 N N N 0 2.336 0.32 2.939
7 CG1 C CG1 N N N 0 1.432 -0.42 1.952
8 CD1 C CD1 N N N 0 0.502 0.562 1.287
9 OE1 O OE1 N N N 0 0.558 1.739 1.574
10 N2 N N2 N N N 0 -0.39 0.132 0.373
11 CA2 C CA2 R N N 0 -1.293 1.087 -0.272
12 C2 C C2 N N N 0 -2.559 1.209 0.536
13 O2 O O2 N N N 0 -3.178 2.252 0.541
14 N3 N N3 N N N 0 -3.002 0.159 1.255
15 CA3 C CA3 N N N 0 -4.232 0.276 2.042
16 C3 C C3 N N N 0 -4.505 -1.027 2.746
17 O31 O O31 N N N 0 -3.75 -1.959 2.605
18 O32 O O32 N N N 0 -5.588 -1.153 3.53
19 CB2 C CB2 N N N 0 -1.634 0.595 -1.68
20 SG2 S SG2 N N N 0 -0.11 0.449 -2.654
21 C' C C' N N N 0 -0.798 -0.135 -4.228
22 C1' C C1' N Y N 0 0.317 -0.332 -5.221
23 C2' C C2' N Y N 0 0.955 -1.556 -5.311
24 C3' C C3' N Y N 0 1.978 -1.737 -6.222
25 C4' C C4' N Y N 0 2.365 -0.694 -7.044
26 C5' C C5' N Y N 0 1.727 0.528 -6.955
27 C6' C C6' N Y N 0 0.7 0.708 -6.047
28 HN11 H 1HN1 N N N 0 1.84 -2.074 3.669
29 HN12 H 2HN1 N N N 0 1.943 -1.188 5.021
30 HA1 H HA1 N N N 0 3.892 -1.166 2.857
31 HO1 H HO1 N N N 0 5.921 1.015 4.798
32 HB11 H 1HB1 N N N 0 1.724 0.811 3.695
33 HB12 H 2HB1 N N N 0 2.921 1.069 2.404
34 HG11 H 1HG1 N N N 0 2.044 -0.91 1.195
35 HG12 H 2HG1 N N N 0 0.847 -1.168 2.487
36 HN2 H HN2 N N N 0 -0.434 -0.808 0.144
37 HA2 H HA2 N N N 0 -0.808 2.061 -0.335
38 HN3 H HN3 N N N 0 -2.507 -0.675 1.252
39 HA31 H 1HA3 N N N 0 -4.117 1.071 2.78
40 HA32 H 2HA3 N N N 0 -5.065 0.513 1.38
41 HO3 H HO3 N N N 0 -5.763 -1.989 3.982
42 HB21 H 1HB2 N N N 0 -2.119 -0.378 -1.617
43 HB22 H 2HB2 N N N 0 -2.306 1.305 -2.161
44 H'1 H 1H' N N N 0 -1.315 -1.081 -4.069
45 H'2 H 2H' N N N 0 -1.501 0.602 -4.614
46 H2' H H2' N N N 0 0.653 -2.37 -4.669
47 H3' H H3' N N N 0 2.477 -2.692 -6.291
48 H4' H H4' N N N 0 3.165 -0.835 -7.755
49 H5' H H5' N N N 0 2.028 1.342 -7.597
50 H6' H H6' N N N 0 0.202 1.663 -5.977