Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GT5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 81


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N N N 0 9.329 2.277 -1.549
2 C6 C C2 N Y N 0 6.49 -0.11 -0.174
3 C7 C C3 N N N 0 5.23 -0.739 0.236
4 C10 C C4 N N N 0 1.671 -0.159 -0.364
5 C13 C C5 N N N 0 -1.981 -0.182 -0.191
6 C15 C C6 S N N 0 -4.39 0.124 0.012
7 C17 C C7 N Y N 0 -4.857 2.556 -0.123
8 C20 C C8 N Y N 0 -3.893 5.069 0.509
9 C21 C C9 N N N 0 -3.368 6.439 0.853
10 C24 C C10 N Y N 0 -5.183 3.137 1.088
11 C26 C C11 N N N 0 -4.043 -2.325 0.367
12 C28 C C12 N N N 0 -3.493 -5.045 0.854
13 C3 C C13 N Y N 0 8.36 1.268 -0.99
14 S5 S S1 N Y N 0 6.664 1.474 -0.926
15 N2 N N1 N Y N 0 8.694 0.124 -0.485
16 C1 C C14 N Y N 0 7.731 -0.641 -0.038
17 O44 O O1 N N N 0 5.239 -1.842 0.748
18 N8 N N2 N N N 0 4.062 -0.094 0.046
19 C9 C C15 S N N 0 2.803 -0.722 0.456
20 C40 C C16 N N N 0 2.55 -0.438 1.938
21 C41 C C17 N N N 0 3.633 -1.115 2.779
22 C43 C C18 N N N 0 3.453 -0.729 4.249
23 C42 C C19 N N N 0 3.517 -2.634 2.633
24 O39 O O2 N N N 0 1.893 0.683 -1.208
25 N11 N N3 N N N 0 0.411 -0.592 -0.16
26 C12 C C20 S N N 0 -0.69 -0.045 -0.957
27 C32 C C21 N N N 0 -0.796 -0.814 -2.276
28 O36 O O3 N N N 0 -1.16 -2.17 -2.009
29 C34 C C22 N N N 0 -1.286 -2.979 -3.18
30 O31 O O4 N N N 0 -1.981 -0.686 0.912
31 N14 N N4 N N N 0 -3.135 0.257 -0.732
32 C25 C C23 N N N 0 -4.978 -1.268 -0.224
33 S27 S S2 N N N 0 -4.741 -3.975 0.087
34 O29 O O5 N N N 0 -5.95 -4.087 0.826
35 O30 O O6 N N N 0 -4.757 -4.228 -1.311
36 C16 C C24 N N N 0 -5.382 1.186 -0.467
37 C18 C C25 N Y N 0 -4.053 3.234 -1.02
38 C19 C C26 N Y N 0 -3.571 4.49 -0.705
39 N22 N N5 N N N 0 -4.32 7.458 0.393
40 C23 C C27 N Y N 0 -4.707 4.396 1.401
41 H1 H H1 N N N 0 9.649 2.952 -0.756
42 H2 H H2 N N N 0 10.196 1.76 -1.959
43 H3 H H3 N N N 0 8.841 2.85 -2.338
44 H4 H H4 N N N 0 -4.197 0.261 1.077
45 H5 H H5 N N N 0 -3.243 6.519 1.933
46 H6 H H6 N N N 0 -2.406 6.593 0.364
47 H7 H H7 N N N 0 -5.811 2.608 1.789
48 H8 H H8 N N N 0 -3.067 -2.256 -0.113
49 H9 H H9 N N N 0 -3.933 -2.154 1.438
50 H10 H H10 N N N 0 -3.4 -4.794 1.911
51 H11 H H11 N N N 0 -3.797 -6.087 0.753
52 H12 H H12 N N N 0 -2.534 -4.897 0.359
53 H13 H H13 N N N 0 7.908 -1.612 0.401
54 H14 H H14 N N N 0 4.054 0.786 -0.362
55 H15 H H15 N N N 0 2.866 -1.798 0.298
56 H16 H H16 N N N 0 2.575 0.638 2.111
57 H17 H H17 N N N 0 1.572 -0.828 2.221
58 H18 H H18 N N N 0 4.616 -0.791 2.436
59 H19 H H19 N N N 0 2.471 -1.053 4.592
60 H20 H H20 N N N 0 4.225 -1.212 4.848
61 H21 H H21 N N N 0 3.536 0.353 4.353
62 H22 H H22 N N N 0 2.535 -2.958 2.976
63 H23 H H23 N N N 0 3.645 -2.909 1.586
64 H24 H H24 N N N 0 4.289 -3.116 3.232
65 H25 H H25 N N N 0 0.233 -1.266 0.515
66 H26 H H26 N N N 0 -0.5 1.008 -1.165
67 H27 H H27 N N N 0 -1.555 -0.352 -2.906
68 H28 H H28 N N N 0 0.166 -0.79 -2.789
69 H29 H H29 N N N 0 -2.056 -2.562 -3.829
70 H30 H H30 N N N 0 -0.334 -3.0 -3.711
71 H31 H H31 N N N 0 -1.564 -3.993 -2.893
72 H32 H H32 N N N 0 -3.135 0.66 -1.614
73 H33 H H33 N N N 0 -5.954 -1.336 0.257
74 H34 H H34 N N N 0 -5.088 -1.439 -1.295
75 H35 H H35 N N N 0 -5.506 1.105 -1.547
76 H36 H H36 N N N 0 -6.343 1.032 0.022
77 H37 H H37 N N N 0 -3.801 2.781 -1.968
78 H38 H H38 N N N 0 -2.935 5.016 -1.402
79 H39 H H39 N N N 0 -3.99 8.386 0.612
80 H40 H H40 N N N 0 -4.502 7.364 -0.595
81 H42 H H42 N N N 0 -4.962 4.851 2.347