Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GUE

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 55


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -7.42 0.579 0.548
2 C2 C C1 N N N 0 -7.261 1.906 0.81
3 N3 N N2 N N N 0 -6.1 2.509 0.683
4 C4 C C2 N N N 0 -5.006 1.835 0.289
5 C6 C C3 R N N 0 -4.276 -1.572 -1.135
6 C1' C C4 N Y N 0 2.136 -1.384 -0.35
7 C2' C C5 N Y N 0 1.456 -0.257 0.121
8 C3' C C6 N Y N 0 0.084 -0.2 0.038
9 C4' C C7 N Y N 0 -0.627 -1.262 -0.513
10 C5' C C8 N Y N 0 0.047 -2.386 -0.982
11 O4 O O1 N N N 0 -3.931 2.407 0.176
12 C4A C C9 N N N 0 -5.117 0.457 0.008
13 N5 N N3 N N N 1 -4.05 -0.313 -0.383
14 C7 C C10 N N N 0 -5.311 -2.367 -0.334
15 N8 N N4 N N N 0 -6.493 -1.507 -0.154
16 C8A C C11 N N N 0 -6.35 -0.171 0.14
17 N2 N N5 N N N 0 -8.347 2.635 1.219
18 C9 C C12 N N N 0 -2.908 -2.26 -1.158
19 N10 N N6 N N N 0 -2.015 -1.201 -0.594
20 C6' C C13 N Y N 0 1.42 -2.45 -0.903
21 C11 C C14 N N N 0 3.608 -1.447 -0.268
22 O11 O O2 N N N 0 4.199 -2.426 -0.683
23 N N N7 N N N 0 4.298 -0.419 0.265
24 CA C C15 S N N 0 5.76 -0.481 0.346
25 C C C16 N N N 0 6.163 -1.214 1.599
26 OX1 O O3 N N N 0 7.462 -1.393 1.884
27 OX2 O O4 N N N 0 5.316 -1.64 2.349
28 CB C C17 N N N 0 6.329 0.938 0.379
29 CG C C18 N N N 0 6.027 1.64 -0.947
30 CD C C19 N N N 0 6.588 3.038 -0.914
31 OE1 O O5 N N N 0 6.441 3.845 -1.976
32 OE2 O O6 N N N 0 7.17 3.433 0.068
33 C1 C C20 N N N 0 -2.795 -0.149 -0.185
34 H1 H H1 N N N 0 -4.632 -1.369 -2.145
35 H2 H H2 N N N 0 2.007 0.567 0.549
36 H3 H H3 N N N 0 -0.442 0.671 0.401
37 H4 H H4 N N N 0 -0.507 -3.208 -1.409
38 H7 H H7 N N N 0 -5.59 -3.268 -0.881
39 H8 H H8 N N N 0 -4.9 -2.636 0.639
40 H9 H H9 N N N 0 -7.381 -1.885 -0.247
41 H10 H H10 N N N 0 -9.211 2.205 1.317
42 H11 H H11 N N N 0 -8.252 3.581 1.41
43 H12 H H12 N N N 0 -2.911 -3.145 -0.523
44 H13 H H13 N N N 0 -2.625 -2.52 -2.178
45 H14 H H14 N N N 0 1.942 -3.322 -1.267
46 H15 H H15 N N N 0 3.827 0.361 0.595
47 H16 H H16 N N N 0 6.149 -1.009 -0.525
48 H17 H H17 N N N 0 7.672 -1.868 2.699
49 H18 H H18 N N N 0 5.872 1.494 1.197
50 H19 H H19 N N N 0 7.408 0.893 0.528
51 H20 H H20 N N N 0 6.484 1.084 -1.765
52 H21 H H21 N N N 0 4.948 1.685 -1.096
53 H22 H H22 N N N 0 6.818 4.733 -1.909
54 H23 H H23 N N N 0 -2.385 0.743 0.266
55 H25 H H25 N N N 0 -8.29 0.164 0.654