Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GXA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 61


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N3 N N1 N N N 0 -6.067 3.734 0.886
2 C4 C C1 N N N 0 -9.753 -4.027 0.132
3 N2 N N2 N Y N 0 -8.781 -0.596 0.43
4 C7 C C2 N Y N 0 -5.137 -1.095 -0.348
5 C6 C C3 N Y N 0 -6.291 -0.414 0.042
6 C9 C C4 N Y N 0 -3.871 0.936 -0.186
7 C13 C C5 N N N 0 -0.57 1.815 -1.436
8 C20 C C6 N Y N 0 4.987 0.52 1.412
9 C21 C C7 N Y N 0 6.346 0.733 1.535
10 C8 C C8 N Y N 0 -3.937 -0.423 -0.458
11 C18 C C9 N N N 0 3.031 -0.684 0.419
12 C16 C C10 N N N 0 -0.911 0.079 0.331
13 C19 C C11 N Y N 0 4.514 -0.449 0.547
14 N1 N N3 N Y N 0 -9.091 -2.722 0.197
15 C1 C C12 N Y N 0 -7.758 -2.481 0.008
16 C2 C C13 N Y N 0 -7.579 -1.143 0.157
17 C3 C C14 N Y N 0 -9.684 -1.536 0.454
18 C5 C C15 N Y N 0 -6.236 0.946 0.322
19 C10 C C16 N Y N 0 -5.023 1.627 0.213
20 C11 C C17 N N N 0 -4.956 3.071 0.509
21 O1 O O1 N N N 0 -3.898 3.663 0.412
22 O2 O O2 N N N 0 -2.688 1.592 -0.294
23 C12 C C18 N N N 0 -1.58 0.852 -0.808
24 C14 C C19 N N N 0 0.601 1.015 -2.016
25 N4 N N4 N N N 0 1.159 0.16 -0.96
26 C15 C C20 N N N 0 0.256 -0.741 -0.229
27 C17 C C21 N N N 0 2.474 0.199 -0.667
28 O3 O O3 N N N 0 3.208 0.947 -1.277
29 C22 C C22 N Y N 0 7.237 -0.026 0.789
30 C23 C C23 N Y N 0 6.759 -0.997 -0.078
31 C24 C C24 N Y N 0 5.399 -1.203 -0.202
32 O4 O O4 N N N 0 8.574 0.183 0.908
33 C25 C C25 N N N 0 9.432 -0.636 0.11
34 F1 F F1 N N N 0 10.766 -0.291 0.354
35 F2 F F2 N N N 0 9.231 -1.981 0.438
36 F3 F F3 N N N 0 9.139 -0.437 -1.243
37 H9 H H1 N N N 0 -6.911 3.263 0.963
38 H10 H H2 N N N 0 -6.021 4.683 1.085
39 H4 H H3 N N N 0 -9.751 -4.485 1.121
40 H3 H H4 N N N 0 -10.782 -3.896 -0.205
41 H5 H H5 N N N 0 -9.221 -4.671 -0.568
42 H7 H H6 N N N 0 -5.182 -2.152 -0.561
43 H12 H H7 N N N 0 -1.053 2.382 -2.231
44 H13 H H8 N N N 0 -0.2 2.501 -0.674
45 H22 H H9 N N N 0 4.294 1.107 1.995
46 H23 H H10 N N N 0 6.716 1.49 2.211
47 H8 H H11 N N N 0 -3.047 -0.957 -0.755
48 H21 H H12 N N N 0 2.849 -1.729 0.167
49 H20 H H13 N N N 0 2.543 -0.449 1.365
50 H19 H H14 N N N 0 -0.537 0.781 1.076
51 H18 H H15 N N N 0 -1.637 -0.59 0.793
52 H1 H H16 N N N 0 -6.996 -3.213 -0.217
53 H2 H H17 N N N 0 -10.736 -1.39 0.648
54 H6 H H18 N N N 0 -7.128 1.474 0.624
55 H11 H H19 N N N 0 -1.931 0.15 -1.565
56 H15 H H20 N N N 0 0.247 0.395 -2.839
57 H14 H H21 N N N 0 1.369 1.7 -2.375
58 H17 H H22 N N N 0 0.797 -1.214 0.59
59 H16 H H23 N N N 0 -0.126 -1.504 -0.907
60 H24 H H24 N N N 0 7.45 -1.59 -0.66
61 H25 H H25 N N N 0 5.027 -1.959 -0.877