Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GYU

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1A C C1 N N N 0 1.383 1.915 3.274
2 O1A O O1A N N N 0 2.317 1.617 4.011
3 O1 O O1B N N N 0 1.289 1.548 1.958
4 C12 C C12 N N N 0 0.073 3.202 4.956
5 C13 C C13 N N N 0 0.664 4.598 5.11
6 C14 C C14 N N N 0 0.044 5.608 4.156
7 C2 C C5 N N N 0 2.137 0.436 -0.031
8 N2 N N5 N N N 0 1.961 1.638 -0.813
9 C10 C C10 N N N 0 3.014 2.331 -1.384
10 O10 O O10 N N N 0 4.201 2.037 -1.311
11 C11 C C11 N N N 0 2.6 3.542 -2.151
12 C3 C C6 N N N 0 0.949 -0.515 -0.197
13 O3 O O6 N N N 0 0.906 -0.961 -1.554
14 C4 C C7 N N N 0 1.107 -1.734 0.716
15 O4 O O7 N N N 0 -0.109 -2.477 0.674
16 C1 C C15 N N N 0 2.368 0.767 1.447
17 O5 O O8 N N N 0 2.557 -0.438 2.193
18 NAC N NAC N N N 0 0.28 2.66 3.632
19 C5 C C8 N N N 0 1.425 -1.314 2.156
20 C6 C C9 N N N 0 1.759 -2.511 3.042
21 O6 O O9 N N N 0 2.05 -2.04 4.344
22 HAC H HAC N N N 0 -0.428 2.839 2.926
23 H1 H H15 N N N 0 3.277 1.368 1.559
24 H121 H H121 N N N 0 0.55 2.513 5.661
25 H122 H H122 N N N 0 -1.003 3.202 5.154
26 H131 H H131 N N N 0 0.499 4.94 6.139
27 H132 H H132 N N N 0 1.748 4.568 4.948
28 H141 H H141 N N N 0 -1.04 5.67 4.3
29 H142 H H142 N N N 0 0.465 6.603 4.334
30 H143 H H143 N N N 0 0.239 5.343 3.112
31 H111 H H111 N N N 0 3.057 4.465 -1.758
32 H2 H H5 N N N 0 3.032 -0.052 -0.435
33 HN21 H HA N N N 0 1.019 1.992 -0.952
34 H3 H H6 N N N 0 -0.003 -0.005 -0.003
35 H112 H H112 N N N 0 2.905 3.494 -3.209
36 H113 H H113 N N N 0 1.517 3.741 -2.17
37 HO3 H HB N N Y 0 1.705 -1.49 -1.693
38 H4 H H7 N N N 0 1.9 -2.383 0.324
39 HO4 H HC N N Y 0 -0.383 -2.504 -0.255
40 H5 H H8 N N N 0 0.56 -0.813 2.608
41 H61 H H9C1 N N N 0 2.628 -3.035 2.645
42 HO6 H H9 N N Y 0 2.976 -2.268 4.531
43 H62 H H9C2 N N N 0 0.907 -3.19 3.085