Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : H2M

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 2.323 0.674 -0.034
2 C5 C C2 N Y N 0 3.418 1.488 0.216
3 C6 C C3 N Y N 0 3.298 2.861 0.112
4 C7 C C4 N Y N 0 2.087 3.431 -0.24
5 C8 C C5 N Y N 0 0.989 2.633 -0.491
6 C10 C C6 N Y N 0 -0.08 0.387 -0.653
7 C13 C C7 N Y N 0 -2.274 -1.229 -1.146
8 C15 C C8 N Y N 0 -1.3 0.656 -0.036
9 O O O1 N N N 0 1.893 -0.968 2.284
10 C2 C C9 N N N 0 2.221 -1.412 1.204
11 C1 C C10 N N N 0 2.462 -2.865 0.845
12 N N N1 N N N 0 2.443 -0.715 0.071
13 C3 C C11 N N N 0 2.804 -1.546 -0.975
14 C C C12 N N N 0 2.842 -2.813 -0.621
15 C9 C C13 N Y N 0 1.097 1.249 -0.384
16 C14 C C14 N Y N 0 -2.39 -0.152 -0.285
17 C16 C C15 N N N 0 -3.711 0.138 0.381
18 F2 F F1 N N N 0 -3.483 0.74 1.623
19 F1 F F2 N N N 0 -4.46 1.001 -0.425
20 F F F3 N N N 0 -4.413 -1.058 0.565
21 C12 C C16 N Y N 0 -1.065 -1.501 -1.762
22 C11 C C17 N Y N 0 0.031 -0.699 -1.52
23 H1 H H1 N N N 0 4.366 1.049 0.491
24 H2 H H2 N N N 0 4.152 3.491 0.307
25 H3 H H3 N N N 0 2.002 4.504 -0.324
26 H4 H H4 N N N 0 0.046 3.082 -0.766
27 H5 H H5 N N N 0 -3.13 -1.859 -1.339
28 H6 H H6 N N N 0 -1.392 1.496 0.637
29 H7 H H7 N N N 0 3.278 -3.276 1.439
30 H8 H H8 N N N 0 1.553 -3.449 0.985
31 H9 H H9 N N N 0 3.026 -1.195 -1.972
32 H10 H H10 N N N 0 3.092 -3.653 -1.252
33 H11 H H11 N N N 0 -0.98 -2.343 -2.433
34 H12 H H12 N N N 0 0.974 -0.912 -2.002