Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : H3D

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N N N 0 -1.984 1.508 -1.424
2 C5 C C2 N N N 0 -2.615 -1.668 0.428
3 C6 C C3 N N N 0 -3.591 -2.809 0.298
4 C7 C C4 N Y N 0 -0.281 0.045 -0.335
5 C8 C C5 N Y N 0 0.694 0.875 0.187
6 C10 C C6 N Y N 0 2.374 -0.746 -0.383
7 C13 C C7 N N N 0 4.667 -0.139 -0.219
8 O O O1 N N N 0 -1.845 -1.633 1.364
9 N N N1 N N N 0 -2.598 -0.687 -0.495
10 C3 C C8 N N N 0 -1.725 0.476 -0.313
11 C2 C C9 N N N 0 -2.048 1.176 1.023
12 C1 C C10 N N N 0 -3.025 2.312 0.63
13 C C C11 N N N 0 -2.455 2.8 -0.725
14 C12 C C12 N Y N 0 0.067 -1.176 -0.881
15 C11 C C13 N Y N 0 1.391 -1.572 -0.906
16 O1 O O2 N N N 0 3.673 -1.151 -0.413
17 C14 C C14 N N N 0 4.246 0.725 0.978
18 O2 O O3 N N N 0 2.973 1.31 0.683
19 C9 C C15 N Y N 0 2.023 0.481 0.169
20 H1 H H1 N N N 0 -1.065 1.698 -1.979
21 H2 H H2 N N N 0 -2.759 1.144 -2.099
22 H3 H H3 N N N 0 -4.517 -2.556 0.815
23 H4 H H4 N N N 0 -3.801 -2.989 -0.756
24 H5 H H5 N N N 0 -3.161 -3.707 0.741
25 H6 H H6 N N N 0 0.42 1.831 0.609
26 H7 H H7 N N N 0 5.631 -0.605 -0.015
27 H8 H H8 N N N 0 4.74 0.482 -1.112
28 H9 H H9 N N N 0 -3.163 -0.75 -1.281
29 H10 H H10 N N N 0 -2.528 0.481 1.712
30 H11 H H11 N N N 0 -1.141 1.587 1.467
31 H12 H H12 N N N 0 -4.037 1.925 0.507
32 H13 H H13 N N N 0 -3.006 3.111 1.371
33 H14 H H14 N N N 0 -1.615 3.475 -0.564
34 H15 H H15 N N N 0 -3.232 3.29 -1.311
35 H16 H H16 N N N 0 -0.697 -1.821 -1.288
36 H17 H H17 N N N 0 1.66 -2.525 -1.337
37 H18 H H18 N N N 0 4.167 0.103 1.87
38 H19 H H19 N N N 0 4.983 1.511 1.142