Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : H5M

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 21


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 1.074 -0.489 0.678
2 CA C CA S N N 0 0.035 -0.519 -0.386
3 C C C N N N 0 0.583 0.011 -1.685
4 O O O N N N 0 1.526 0.767 -1.679
5 OXT O OXT N N Y 0 0.023 -0.354 -2.849
6 CB C CB S N N 0 -1.068 0.416 0.165
7 CG C CG N N N 0 -1.056 0.11 1.68
8 CD C CD S N N 0 0.335 -0.486 1.959
9 OB O OB N N N 0 -2.339 0.097 -0.404
10 CD1 C CD1 N N N 0 1.075 0.372 2.986
11 H H HN N N Y 0 1.569 -1.367 0.625
12 HA H HA N N N 0 -0.348 -1.531 -0.517
13 HXT H HXT N N Y 0 0.375 -0.013 -3.683
14 HB H HB N N N 0 -0.816 1.461 -0.018
15 HG2 H 1HG N N N 0 -1.834 -0.612 1.927
16 HG3 H 2HG N N N 0 -1.195 1.027 2.253
17 HD H HD N N N 0 0.234 -1.506 2.331
18 HOB H HOB N N N 0 -2.992 0.658 0.035
19 HD11 H 1HD1 N N N 0 2.061 -0.052 3.172
20 HD12 H 2HD1 N N N 0 1.183 1.386 2.601
21 HD13 H 3HD1 N N N 0 0.508 0.395 3.916