Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HBD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 17


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -0.031 -0.003 0.656
2 C2 C C2 N Y N 0 -1.227 -0.006 -0.065
3 C3 C C3 N Y N 0 -1.199 -0.014 -1.442
4 C4 C C4 N Y N 0 0.017 -0.019 -2.113
5 C5 C C5 N Y N 0 1.21 -0.016 -1.399
6 C6 C C6 N Y N 0 1.189 -0.003 -0.022
7 C1' C C1' N N N 0 -0.057 0.004 2.132
8 O1' O O1' N N N 0 -1.121 0.009 2.721
9 N1' N N1' N N N 0 1.097 0.007 2.826
10 O4 O O4 N N N 0 0.042 -0.026 -3.47
11 H2 H H2 N N N 0 -2.173 -0.002 0.455
12 H3 H H3 N N N 0 -2.123 -0.016 -2.0
13 H5 H H5 N N N 0 2.153 -0.019 -1.924
14 H6 H H6 N N N 0 2.116 0.0 0.532
15 HO4 H HO4 N N N 0 0.048 0.897 -3.755
16 HN'1 H 1HN' N N N 0 1.08 0.012 3.796
17 HN'2 H 2HN' N N N 0 1.945 0.0 2.356