Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : HDJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C11 C C1 N Y N 0 4.706 1.153 -0.037
2 C12 C C2 N Y N 0 3.333 1.268 0.084
3 C13 C C3 S N N 0 -3.186 0.576 0.53
4 C14 C C4 R N N 0 -3.933 -0.754 0.326
5 C16 C C5 N N N 0 -3.073 -1.991 0.597
6 C17 C C6 N N N 0 -5.181 1.713 -0.516
7 C1 C C7 N Y N 0 -0.876 0.795 1.465
8 C10 C C8 N Y N 0 5.285 -0.09 -0.218
9 C15 C C9 R N N 0 -3.888 1.052 -0.756
10 C2 C C10 N Y N 0 -1.69 0.459 0.399
11 C3 C C11 N Y N 0 -1.135 0.014 -0.788
12 C35 C C12 N N N 0 6.782 -0.208 -0.349
13 C4 C C13 N Y N 0 0.235 -0.095 -0.914
14 C5 C C14 N Y N 0 1.06 0.243 0.158
15 C6 C C15 N Y N 0 0.495 0.695 1.349
16 C7 C C16 N Y N 0 2.533 0.126 0.029
17 C8 C C17 N Y N 0 3.125 -1.125 -0.148
18 C9 C C18 N Y N 0 4.497 -1.225 -0.278
19 F1 F F1 N N N 0 2.769 2.483 0.256
20 F2 F F2 N N N 0 2.356 -2.235 -0.203
21 F3 F F3 N N N 0 -3.836 -3.145 0.387
22 N1 N N1 N N N 0 -4.006 -0.381 -1.103
23 N2 N N2 N N N 0 -6.179 2.223 -0.33
24 H1 H H1 N N N 0 5.327 2.035 0.005
25 H2 H H2 N N N 0 -3.493 1.119 1.424
26 H3 H H3 N N N 0 -4.903 -0.794 0.822
27 H4 H H4 N N N 0 -2.217 -1.993 -0.078
28 H5 H H5 N N N 0 -2.722 -1.97 1.629
29 H6 H H6 N N N 0 -1.315 1.142 2.389
30 H7 H H7 N N N 0 -3.24 1.617 -1.426
31 H8 H H8 N N N 0 -1.775 -0.248 -1.617
32 H9 H H9 N N N 0 7.223 -0.347 0.638
33 H10 H H10 N N N 0 7.025 -1.063 -0.979
34 H11 H H11 N N N 0 7.18 0.701 -0.8
35 H12 H H12 N N N 0 0.668 -0.443 -1.84
36 H13 H H13 N N N 0 1.13 0.958 2.183
37 H14 H H14 N N N 0 4.956 -2.193 -0.415
38 H15 H H15 N N N 0 -4.918 -0.586 -1.484