Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HDL

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 22


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1A O O1A N N N 0 -2.962 -0.423 -1.645
2 C1 C C1 N N N 0 -2.758 -0.265 -0.327
3 O1B O O1B N N N 0 -3.467 -0.836 0.467
4 C2 C C2 S N N 0 -1.644 0.625 0.161
5 O2 O O2 N N N 0 -1.703 0.723 1.586
6 C3 C C3 R N N 0 -0.297 0.031 -0.255
7 O3 O O3 N N N 0 -0.203 -1.314 0.221
8 C4 C C4 S N N 0 0.836 0.865 0.347
9 O4 O O4 N N N 0 0.741 2.21 -0.129
10 C5 C C5 N N N 0 2.163 0.28 -0.063
11 O5 O O5 N N N 0 2.911 0.914 -0.775
12 N6 N N6 N N N 0 2.517 -0.949 0.363
13 O6 O O6 N N N 0 3.764 -1.499 -0.022
14 HO1A H HO1A N N N 0 -3.689 -1.003 -1.91
15 H2 H H2 N N N 0 -1.754 1.618 -0.276
16 HO2 H HO2 N N N 0 -1.612 -0.125 2.042
17 H3 H H3 N N N 0 -0.217 0.038 -1.342
18 HO3 H HO3 N N N 0 -0.266 -1.396 1.182
19 H4 H H4 N N N 0 0.755 0.858 1.434
20 HO4 H HO4 N N N 0 0.805 2.292 -1.09
21 H8 H H8 N N N 0 1.918 -1.456 0.933
22 H9 H H9 N N N 0 3.929 -2.384 0.332