Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HM5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 S S S N Y N 0 3.554 1.545 9.111
2 N1 N N1 N Y N 0 2.056 0.269 7.434
3 N2 N N2 N N N 0 3.922 1.487 6.516
4 N3 N N3 N Y N 0 6.05 1.961 4.94
5 N4 N N4 N N N 0 3.365 2.061 2.411
6 C1 C C1 N Y N 0 2.217 0.669 9.733
7 C2 C C2 N Y N 0 1.541 0.058 8.698
8 C3 C C3 N Y N 0 3.089 1.023 7.565
9 C4 C C4 N N N 0 3.81 1.236 5.141
10 C5 C C5 N Y N 0 4.857 1.829 4.319
11 C6 C C6 N Y N 0 7.049 2.507 4.211
12 C7 C C7 N Y N 0 6.911 2.926 2.897
13 C8 C C8 N Y N 0 5.667 2.774 2.293
14 C9 C C9 N Y N 0 4.634 2.218 3.02
15 C10 C C10 N N N 0 2.994 2.404 1.115
16 C11 C C11 N N N 0 1.512 2.082 0.8
17 C12 C C12 N N N 0 0.602 2.861 1.769
18 C13 C C13 N N N 0 1.244 0.58 0.986
19 C14 C C14 N N N 0 1.169 2.509 -0.636
20 O1 O O1 N N N 0 2.915 0.537 4.647
21 O2 O O2 N N N 0 3.724 2.912 0.266
22 HN2 H HN2 N N N 0 4.701 2.077 6.797
23 HN4 H HN4 N N N 0 2.656 1.645 3.01
24 H1 H H1 N N N 0 1.996 0.644 10.791
25 H2 H H2 N N N 0 0.659 -0.557 8.812
26 H6 H H6 N N N 0 7.998 2.604 4.727
27 H7 H H7 N N N 0 7.745 3.358 2.357
28 H8 H H8 N N N 0 5.53 3.093 1.264
29 H121 H 1H12 N N N 0 0.805 2.588 2.811
30 H122 H 2H12 N N N 0 -0.457 2.659 1.572
31 H123 H 3H12 N N N 0 0.756 3.943 1.676
32 H131 H 1H13 N N N 0 1.554 0.248 1.984
33 H132 H 2H13 N N N 0 1.788 -0.029 0.257
34 H133 H 3H13 N N N 0 0.179 0.351 0.87
35 H141 H 1H14 N N N 0 1.425 3.561 -0.803
36 H142 H 2H14 N N N 0 0.1 2.384 -0.841
37 H143 H 3H14 N N N 0 1.713 1.92 -1.382