Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HOP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 55


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 1.26 -0.106 8.853
2 C2 C C2 N Y N 0 -0.006 -0.168 8.304
3 C6 C C6 N Y N 0 2.368 -0.041 8.029
4 C5 C C5 N Y N 0 2.209 -0.039 6.656
5 C4 C C4 N Y N 0 0.942 -0.102 6.107
6 C10 C C10 R N N 0 -0.954 -0.173 2.242
7 C3 C C3 N Y N 0 -0.165 -0.162 6.931
8 C7 C C7 S N N 0 0.769 -0.1 4.61
9 C12 C C12 N N N 0 -0.071 1.109 4.195
10 C11 C C11 S N N 0 -0.247 1.111 2.676
11 C9 C C9 N N N 0 -0.114 -1.383 2.656
12 C8 C C8 N N N 0 0.061 -1.385 4.176
13 C13 C C13 N Y N 0 -1.127 -0.171 0.745
14 C14 C C14 N Y N 0 -2.397 -0.234 0.198
15 C15 C C15 N Y N 0 -2.562 -0.232 -1.17
16 C16 C C16 N Y N 0 -1.446 -0.166 -2.005
17 C17 C C17 N Y N 0 -0.168 -0.102 -1.447
18 C18 C C18 N Y N 0 -0.016 -0.099 -0.076
19 O19 O O19 N N N 0 -1.032 2.241 2.289
20 C20 C C20 N N N 0 -1.616 -0.163 -3.474
21 O21 O O21 N N N 0 -2.73 -0.219 -3.957
22 N22 N N22 N N N 0 -0.535 -0.099 -4.277
23 C24 C C24 N N N 0 0.668 -0.018 -6.404
24 C25 C C25 N N N 0 0.492 -0.015 -7.924
25 C26 C C26 N N N 0 1.844 0.061 -8.586
26 O27 O O27 N N N 0 2.845 0.11 -7.911
27 O28 O O28 N N N 0 1.935 0.077 -9.925
28 H1 H H1 N N N 0 1.384 -0.108 9.926
29 H2 H H2 N N N 0 -0.872 -0.219 8.947
30 H6 H H6 N N N 0 3.358 0.007 8.458
31 H5 H H5 N N N 0 3.075 0.011 6.012
32 H3 H H3 N N N 0 -1.155 -0.21 6.501
33 H7 H H7 N N N 0 1.747 -0.044 4.131
34 H121 H 1H12 N N N 0 0.432 2.025 4.504
35 H122 H 2H12 N N N 0 -1.048 1.053 4.674
36 H11 H H11 N N N 0 0.73 1.167 2.197
37 H10 H H10 N N N 0 -1.932 -0.229 2.721
38 H91 H 1H9 N N N 0 0.863 -1.327 2.177
39 H92 H 2H9 N N N 0 -0.618 -2.298 2.347
40 H81 H 1H8 N N N 0 0.66 -2.247 4.471
41 H82 H 2H8 N N N 0 -0.915 -1.441 4.655
42 H14 H H14 N N N 0 -3.26 -0.286 0.845
43 H15 H H15 N N N 0 -3.554 -0.282 -1.596
44 H17 H H17 N N N 0 0.699 -0.05 -2.088
45 H18 H H18 N N N 0 0.971 -0.05 0.356
46 HO9 H HO9 N N N 0 -0.551 3.028 2.58
47 H232 H 2H23 N N N 0 -1.303 0.764 -6.027
48 C23 C C23 N N N 0 -0.704 -0.097 -5.732
49 HN2 H HN2 N N N 0 0.353 -0.054 -3.891
50 H231 H 1H23 N N N 0 -1.207 -1.013 -6.041
51 H241 H 1H24 N N N 0 1.171 0.897 -6.095
52 H242 H 2H24 N N N 0 1.267 -0.879 -6.109
53 H251 H 1H25 N N N 0 -0.011 -0.931 -8.233
54 H252 H 2H25 N N N 0 -0.106 0.845 -8.219
55 HO8 H HO8 N N N 0 2.802 0.127 -10.35