Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HZD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 102


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 5.473 -2.309 0.305
2 C01 C C2 N N N 0 8.572 4.845 2.465
3 C03 C C3 N Y N 0 7.268 2.898 1.959
4 C04 C C4 N Y N 0 6.858 1.842 1.148
5 C05 C C5 N Y N 0 7.415 1.677 -0.088
6 C06 C C6 N N N 0 6.987 0.543 -0.984
7 C07 C C7 N Y N 0 7.93 -0.62 -0.807
8 C09 C C8 N N N 0 6.611 -1.56 0.951
9 C13 C C9 N N N 0 3.194 -3.171 0.327
10 C14 C C10 N N N 0 1.988 -3.177 1.268
11 C20 C C14 N N N 0 -1.377 1.946 -0.27
12 C16 C C11 N N N 0 0.38 -1.734 2.306
13 C17 C C12 N N N 0 -0.041 -0.267 2.417
14 C19 C C13 N N N 0 -0.915 1.561 1.137
15 C22 C C15 N N N 0 -3.058 1.476 -1.913
16 C23 C C16 N N N 0 -4.297 0.615 -2.17
17 C25 C C17 N N N 0 -6.552 0.373 -1.28
18 C27 C C18 N N N 0 -7.646 0.768 -0.322
19 C28 C C19 N N N 0 -8.885 -0.092 -0.578
20 C29 C C20 N N N 0 -9.995 0.31 0.394
21 C30 C C21 N N N 0 -11.234 -0.55 0.138
22 C31 C C22 R N N 0 -12.345 -0.148 1.11
23 C33 C C23 N N N 0 -14.618 1.286 1.436
24 C34 C C24 S N N 0 -14.899 -0.181 1.058
25 C36 C C25 N N N 0 -14.774 -0.941 -1.1
26 C39 C C26 R N N 0 -13.611 -0.994 0.873
27 C40 C C27 N Y N 0 8.689 -2.533 0.098
28 C41 C C28 N Y N 0 9.704 -2.337 -0.846
29 C43 C C29 N Y N 0 10.753 -3.247 -0.948
30 C44 C C30 N Y N 0 10.795 -4.345 -0.118
31 C45 C C31 N Y N 0 9.793 -4.545 0.82
32 C46 C C32 N Y N 0 8.759 -3.665 0.934
33 C47 C C33 N Y N 0 8.398 2.595 -0.503
34 C48 C C34 N Y N 0 8.768 3.647 0.373
35 C49 C C35 N Y N 0 9.75 4.564 -0.039
36 C50 C C36 N Y N 0 10.327 4.432 -1.265
37 C51 C C37 N Y N 0 9.961 3.398 -2.124
38 C52 C C38 N Y N 0 9.014 2.49 -1.76
39 N02 N N1 N Y N 1 8.181 3.755 1.569
40 N08 N N2 N Y N 1 7.766 -1.554 0.05
41 N12 N N3 N N N 0 4.3 -2.443 0.955
42 N24 N N4 N N N 0 -5.36 1.0 -1.238
43 N35 N N5 N N N 0 -15.541 -0.226 -0.265
44 N38 N N6 N N N 0 -13.655 -1.416 -0.535
45 O11 O O1 N N N 0 5.612 -2.785 -0.801
46 O15 O O2 N N N 0 1.512 -1.84 1.44
47 O18 O O3 N N N 0 -0.495 0.195 1.143
48 O21 O O4 N N N 0 -2.542 1.191 -0.611
49 O26 O O5 N N N 0 -6.745 -0.511 -2.088
50 O37 O O6 N N N 0 -15.066 -1.14 -2.263
51 S32 S S1 N N N 0 -12.928 1.561 0.764
52 S42 S S2 N Y N 0 9.345 -0.858 -1.731
53 H1 H H1 N N N 0 7.942 5.715 2.276
54 H2 H H2 N N N 0 8.45 4.527 3.5
55 H3 H H3 N N N 0 9.615 5.107 2.285
56 H4 H H4 N N N 0 6.819 3.017 2.934
57 H5 H H5 N N N 0 6.102 1.155 1.496
58 H6 H H6 N N N 0 5.976 0.234 -0.722
59 H7 H H7 N N N 0 7.009 0.873 -2.023
60 H8 H H8 N N N 0 6.303 -0.535 1.154
61 H9 H H9 N N N 0 6.882 -2.049 1.887
62 H10 H H10 N N N 0 3.503 -4.196 0.125
63 H11 H H11 N N N 0 2.923 -2.682 -0.609
64 H12 H H12 N N N 0 1.197 -3.792 0.84
65 H13 H H13 N N N 0 2.283 -3.585 2.234
66 H14 H H14 N N N 0 0.642 -2.112 3.295
67 H15 H H15 N N N 0 -0.444 -2.319 1.9
68 H16 H H16 N N N 0 -0.847 -0.175 3.145
69 H17 H H17 N N N 0 0.81 0.332 2.739
70 H18 H H18 N N N 0 -0.081 2.198 1.432
71 H19 H H19 N N N 0 -1.738 1.692 1.839
72 H20 H H20 N N N 0 -1.613 3.009 -0.297
73 H21 H H21 N N N 0 -0.583 1.731 -0.985
74 H22 H H22 N N N 0 -2.299 1.252 -2.662
75 H23 H H23 N N N 0 -3.329 2.53 -1.974
76 H24 H H24 N N N 0 -4.639 0.767 -3.194
77 H25 H H25 N N N 0 -4.047 -0.435 -2.022
78 H26 H H26 N N N 0 -7.305 0.617 0.702
79 H27 H H27 N N N 0 -7.896 1.819 -0.47
80 H28 H H28 N N N 0 -9.227 0.06 -1.602
81 H29 H H29 N N N 0 -8.635 -1.142 -0.43
82 H30 H H30 N N N 0 -9.654 0.159 1.418
83 H31 H H31 N N N 0 -10.246 1.361 0.246
84 H32 H H32 N N N 0 -11.576 -0.399 -0.886
85 H33 H H33 N N N 0 -10.984 -1.601 0.286
86 H34 H H34 N N N 0 -12.004 -0.238 2.142
87 H38 H H38 N N N 0 -13.612 -1.865 1.528
88 H35 H H35 N N N 0 -15.337 1.952 0.958
89 H36 H H36 N N N 0 -14.633 1.416 2.518
90 H37 H H37 N N N 0 -15.541 -0.647 1.805
91 H39 H H39 N N N 0 11.534 -3.092 -1.679
92 H40 H H40 N N N 0 11.609 -5.05 -0.197
93 H41 H H41 N N N 0 9.833 -5.409 1.468
94 H42 H H42 N N N 0 7.988 -3.837 1.671
95 H43 H H43 N N N 0 10.045 5.372 0.614
96 H44 H H44 N N N 0 11.081 5.14 -1.576
97 H45 H H45 N N N 0 10.434 3.316 -3.091
98 H46 H H46 N N N 0 8.738 1.692 -2.434
99 H47 H H47 N N N 0 4.188 -2.058 1.838
100 H48 H H48 N N N 0 -5.206 1.707 -0.592
101 H49 H H49 N N N 0 -16.385 0.193 -0.496
102 H50 H H50 N N N 0 -12.983 -1.952 -0.984