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PDBeChem : Atoms of Molecule
Molecule : HZD
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 102
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C10 |
C |
C1 |
N |
N |
N |
0 |
5.473 |
-2.309 |
0.305 |
2 |
C01 |
C |
C2 |
N |
N |
N |
0 |
8.572 |
4.845 |
2.465 |
3 |
C03 |
C |
C3 |
N |
Y |
N |
0 |
7.268 |
2.898 |
1.959 |
4 |
C04 |
C |
C4 |
N |
Y |
N |
0 |
6.858 |
1.842 |
1.148 |
5 |
C05 |
C |
C5 |
N |
Y |
N |
0 |
7.415 |
1.677 |
-0.088 |
6 |
C06 |
C |
C6 |
N |
N |
N |
0 |
6.987 |
0.543 |
-0.984 |
7 |
C07 |
C |
C7 |
N |
Y |
N |
0 |
7.93 |
-0.62 |
-0.807 |
8 |
C09 |
C |
C8 |
N |
N |
N |
0 |
6.611 |
-1.56 |
0.951 |
9 |
C13 |
C |
C9 |
N |
N |
N |
0 |
3.194 |
-3.171 |
0.327 |
10 |
C14 |
C |
C10 |
N |
N |
N |
0 |
1.988 |
-3.177 |
1.268 |
11 |
C20 |
C |
C14 |
N |
N |
N |
0 |
-1.377 |
1.946 |
-0.27 |
12 |
C16 |
C |
C11 |
N |
N |
N |
0 |
0.38 |
-1.734 |
2.306 |
13 |
C17 |
C |
C12 |
N |
N |
N |
0 |
-0.041 |
-0.267 |
2.417 |
14 |
C19 |
C |
C13 |
N |
N |
N |
0 |
-0.915 |
1.561 |
1.137 |
15 |
C22 |
C |
C15 |
N |
N |
N |
0 |
-3.058 |
1.476 |
-1.913 |
16 |
C23 |
C |
C16 |
N |
N |
N |
0 |
-4.297 |
0.615 |
-2.17 |
17 |
C25 |
C |
C17 |
N |
N |
N |
0 |
-6.552 |
0.373 |
-1.28 |
18 |
C27 |
C |
C18 |
N |
N |
N |
0 |
-7.646 |
0.768 |
-0.322 |
19 |
C28 |
C |
C19 |
N |
N |
N |
0 |
-8.885 |
-0.092 |
-0.578 |
20 |
C29 |
C |
C20 |
N |
N |
N |
0 |
-9.995 |
0.31 |
0.394 |
21 |
C30 |
C |
C21 |
N |
N |
N |
0 |
-11.234 |
-0.55 |
0.138 |
22 |
C31 |
C |
C22 |
R |
N |
N |
0 |
-12.345 |
-0.148 |
1.11 |
23 |
C33 |
C |
C23 |
N |
N |
N |
0 |
-14.618 |
1.286 |
1.436 |
24 |
C34 |
C |
C24 |
S |
N |
N |
0 |
-14.899 |
-0.181 |
1.058 |
25 |
C36 |
C |
C25 |
N |
N |
N |
0 |
-14.774 |
-0.941 |
-1.1 |
26 |
C39 |
C |
C26 |
R |
N |
N |
0 |
-13.611 |
-0.994 |
0.873 |
27 |
C40 |
C |
C27 |
N |
Y |
N |
0 |
8.689 |
-2.533 |
0.098 |
28 |
C41 |
C |
C28 |
N |
Y |
N |
0 |
9.704 |
-2.337 |
-0.846 |
29 |
C43 |
C |
C29 |
N |
Y |
N |
0 |
10.753 |
-3.247 |
-0.948 |
30 |
C44 |
C |
C30 |
N |
Y |
N |
0 |
10.795 |
-4.345 |
-0.118 |
31 |
C45 |
C |
C31 |
N |
Y |
N |
0 |
9.793 |
-4.545 |
0.82 |
32 |
C46 |
C |
C32 |
N |
Y |
N |
0 |
8.759 |
-3.665 |
0.934 |
33 |
C47 |
C |
C33 |
N |
Y |
N |
0 |
8.398 |
2.595 |
-0.503 |
34 |
C48 |
C |
C34 |
N |
Y |
N |
0 |
8.768 |
3.647 |
0.373 |
35 |
C49 |
C |
C35 |
N |
Y |
N |
0 |
9.75 |
4.564 |
-0.039 |
36 |
C50 |
C |
C36 |
N |
Y |
N |
0 |
10.327 |
4.432 |
-1.265 |
37 |
C51 |
C |
C37 |
N |
Y |
N |
0 |
9.961 |
3.398 |
-2.124 |
38 |
C52 |
C |
C38 |
N |
Y |
N |
0 |
9.014 |
2.49 |
-1.76 |
39 |
N02 |
N |
N1 |
N |
Y |
N |
1 |
8.181 |
3.755 |
1.569 |
40 |
N08 |
N |
N2 |
N |
Y |
N |
1 |
7.766 |
-1.554 |
0.05 |
41 |
N12 |
N |
N3 |
N |
N |
N |
0 |
4.3 |
-2.443 |
0.955 |
42 |
N24 |
N |
N4 |
N |
N |
N |
0 |
-5.36 |
1.0 |
-1.238 |
43 |
N35 |
N |
N5 |
N |
N |
N |
0 |
-15.541 |
-0.226 |
-0.265 |
44 |
N38 |
N |
N6 |
N |
N |
N |
0 |
-13.655 |
-1.416 |
-0.535 |
45 |
O11 |
O |
O1 |
N |
N |
N |
0 |
5.612 |
-2.785 |
-0.801 |
46 |
O15 |
O |
O2 |
N |
N |
N |
0 |
1.512 |
-1.84 |
1.44 |
47 |
O18 |
O |
O3 |
N |
N |
N |
0 |
-0.495 |
0.195 |
1.143 |
48 |
O21 |
O |
O4 |
N |
N |
N |
0 |
-2.542 |
1.191 |
-0.611 |
49 |
O26 |
O |
O5 |
N |
N |
N |
0 |
-6.745 |
-0.511 |
-2.088 |
50 |
O37 |
O |
O6 |
N |
N |
N |
0 |
-15.066 |
-1.14 |
-2.263 |
51 |
S32 |
S |
S1 |
N |
N |
N |
0 |
-12.928 |
1.561 |
0.764 |
52 |
S42 |
S |
S2 |
N |
Y |
N |
0 |
9.345 |
-0.858 |
-1.731 |
53 |
H1 |
H |
H1 |
N |
N |
N |
0 |
7.942 |
5.715 |
2.276 |
54 |
H2 |
H |
H2 |
N |
N |
N |
0 |
8.45 |
4.527 |
3.5 |
55 |
H3 |
H |
H3 |
N |
N |
N |
0 |
9.615 |
5.107 |
2.285 |
56 |
H4 |
H |
H4 |
N |
N |
N |
0 |
6.819 |
3.017 |
2.934 |
57 |
H5 |
H |
H5 |
N |
N |
N |
0 |
6.102 |
1.155 |
1.496 |
58 |
H6 |
H |
H6 |
N |
N |
N |
0 |
5.976 |
0.234 |
-0.722 |
59 |
H7 |
H |
H7 |
N |
N |
N |
0 |
7.009 |
0.873 |
-2.023 |
60 |
H8 |
H |
H8 |
N |
N |
N |
0 |
6.303 |
-0.535 |
1.154 |
61 |
H9 |
H |
H9 |
N |
N |
N |
0 |
6.882 |
-2.049 |
1.887 |
62 |
H10 |
H |
H10 |
N |
N |
N |
0 |
3.503 |
-4.196 |
0.125 |
63 |
H11 |
H |
H11 |
N |
N |
N |
0 |
2.923 |
-2.682 |
-0.609 |
64 |
H12 |
H |
H12 |
N |
N |
N |
0 |
1.197 |
-3.792 |
0.84 |
65 |
H13 |
H |
H13 |
N |
N |
N |
0 |
2.283 |
-3.585 |
2.234 |
66 |
H14 |
H |
H14 |
N |
N |
N |
0 |
0.642 |
-2.112 |
3.295 |
67 |
H15 |
H |
H15 |
N |
N |
N |
0 |
-0.444 |
-2.319 |
1.9 |
68 |
H16 |
H |
H16 |
N |
N |
N |
0 |
-0.847 |
-0.175 |
3.145 |
69 |
H17 |
H |
H17 |
N |
N |
N |
0 |
0.81 |
0.332 |
2.739 |
70 |
H18 |
H |
H18 |
N |
N |
N |
0 |
-0.081 |
2.198 |
1.432 |
71 |
H19 |
H |
H19 |
N |
N |
N |
0 |
-1.738 |
1.692 |
1.839 |
72 |
H20 |
H |
H20 |
N |
N |
N |
0 |
-1.613 |
3.009 |
-0.297 |
73 |
H21 |
H |
H21 |
N |
N |
N |
0 |
-0.583 |
1.731 |
-0.985 |
74 |
H22 |
H |
H22 |
N |
N |
N |
0 |
-2.299 |
1.252 |
-2.662 |
75 |
H23 |
H |
H23 |
N |
N |
N |
0 |
-3.329 |
2.53 |
-1.974 |
76 |
H24 |
H |
H24 |
N |
N |
N |
0 |
-4.639 |
0.767 |
-3.194 |
77 |
H25 |
H |
H25 |
N |
N |
N |
0 |
-4.047 |
-0.435 |
-2.022 |
78 |
H26 |
H |
H26 |
N |
N |
N |
0 |
-7.305 |
0.617 |
0.702 |
79 |
H27 |
H |
H27 |
N |
N |
N |
0 |
-7.896 |
1.819 |
-0.47 |
80 |
H28 |
H |
H28 |
N |
N |
N |
0 |
-9.227 |
0.06 |
-1.602 |
81 |
H29 |
H |
H29 |
N |
N |
N |
0 |
-8.635 |
-1.142 |
-0.43 |
82 |
H30 |
H |
H30 |
N |
N |
N |
0 |
-9.654 |
0.159 |
1.418 |
83 |
H31 |
H |
H31 |
N |
N |
N |
0 |
-10.246 |
1.361 |
0.246 |
84 |
H32 |
H |
H32 |
N |
N |
N |
0 |
-11.576 |
-0.399 |
-0.886 |
85 |
H33 |
H |
H33 |
N |
N |
N |
0 |
-10.984 |
-1.601 |
0.286 |
86 |
H34 |
H |
H34 |
N |
N |
N |
0 |
-12.004 |
-0.238 |
2.142 |
87 |
H38 |
H |
H38 |
N |
N |
N |
0 |
-13.612 |
-1.865 |
1.528 |
88 |
H35 |
H |
H35 |
N |
N |
N |
0 |
-15.337 |
1.952 |
0.958 |
89 |
H36 |
H |
H36 |
N |
N |
N |
0 |
-14.633 |
1.416 |
2.518 |
90 |
H37 |
H |
H37 |
N |
N |
N |
0 |
-15.541 |
-0.647 |
1.805 |
91 |
H39 |
H |
H39 |
N |
N |
N |
0 |
11.534 |
-3.092 |
-1.679 |
92 |
H40 |
H |
H40 |
N |
N |
N |
0 |
11.609 |
-5.05 |
-0.197 |
93 |
H41 |
H |
H41 |
N |
N |
N |
0 |
9.833 |
-5.409 |
1.468 |
94 |
H42 |
H |
H42 |
N |
N |
N |
0 |
7.988 |
-3.837 |
1.671 |
95 |
H43 |
H |
H43 |
N |
N |
N |
0 |
10.045 |
5.372 |
0.614 |
96 |
H44 |
H |
H44 |
N |
N |
N |
0 |
11.081 |
5.14 |
-1.576 |
97 |
H45 |
H |
H45 |
N |
N |
N |
0 |
10.434 |
3.316 |
-3.091 |
98 |
H46 |
H |
H46 |
N |
N |
N |
0 |
8.738 |
1.692 |
-2.434 |
99 |
H47 |
H |
H47 |
N |
N |
N |
0 |
4.188 |
-2.058 |
1.838 |
100 |
H48 |
H |
H48 |
N |
N |
N |
0 |
-5.206 |
1.707 |
-0.592 |
101 |
H49 |
H |
H49 |
N |
N |
N |
0 |
-16.385 |
0.193 |
-0.496 |
102 |
H50 |
H |
H50 |
N |
N |
N |
0 |
-12.983 |
-1.952 |
-0.984 |
|