Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : IC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 0.932 -0.079 -4.192
2 OP1 O O1P N N N 0 1.62 1.199 -3.904
3 OP2 O O2P N N N 0 1.974 -1.112 -4.855
4 OP3 O O3P N N Y 0 -0.284 0.183 -5.212
5 O5' O O5* N N N 0 0.359 -0.7 -2.821
6 O3' O O3* N N N 0 -3.437 0.488 -0.64
7 C1' C C1* R N N 0 -0.755 -0.488 1.279
8 C2' C C2* R N N 0 -1.815 0.63 1.185
9 C3' C C3* S N N 0 -2.071 0.776 -0.332
10 C4' C C4* R N N 0 -1.138 -0.274 -0.974
11 C5' C C5* N N N 0 -0.554 0.256 -2.284
12 O4' O O4* N N N 0 -0.089 -0.478 -0.002
13 O2' O O2* N N N 0 -3.015 0.25 1.861
14 N2 N N2 N N N 0 -1.169 -1.386 3.857
15 C4 C C4 N N N 0 1.916 0.303 4.38
16 N3 N N3 N N N 0 0.802 -0.409 4.594
17 C2 C C2 N N N 0 -0.038 -0.654 3.609
18 O4 O O4 N N N 0 2.69 0.525 5.299
19 N1 N N1 N N N 0 0.199 -0.198 2.352
20 C6 C C6 N N N 0 1.317 0.537 2.084
21 C5 C C5 N N N 0 2.191 0.799 3.08
22 HOP2 H 2HOP N N N 0 2.293 -0.702 -5.671
23 HOP3 H 3HOP N N N 0 -0.704 -0.673 -5.373
24 HO3' H H3T N N Y 0 -3.97 1.173 -0.216
25 H1' H H1* N N N 0 -1.234 -1.452 1.45
26 H2' H H2* N N N 0 -1.424 1.561 1.597
27 H3' H H3* N N N 0 -1.808 1.778 -0.671
28 H4' H H4* N N N 0 -1.678 -1.204 -1.149
29 H5' H 1H5* N N N 0 -1.36 0.429 -2.997
30 H5'' H 2H5* N N N 0 -0.03 1.193 -2.095
31 HO2' H 2HO* N N N 0 -3.655 0.96 1.715
32 H21 H 1H2 N N N 0 -1.264 -1.863 4.696
33 H22 H 2H2 N N N 0 -1.877 -1.424 3.194
34 H6 H H6 N N N 0 1.503 0.903 1.085
35 H5 H H5 N N N 0 3.084 1.375 2.889