Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : IMR

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5' O O5* N N N 0 -0.068 -0.017 3.19
2 C5' C C5* N N N 0 0.532 0.537 2.019
3 C4' C C4* R N N 0 0.165 -0.317 0.803
4 N4' N N4* N N N 0 -1.3 -0.308 0.606
5 C3' C C3* R N N 0 0.8 0.277 -0.466
6 O3' O O3* N N N 0 1.673 -0.669 -1.084
7 C2' C C2* S N N 0 -0.396 0.594 -1.4
8 O2' O O2* N N N 0 -0.079 0.276 -2.756
9 C1' C C1* N N N 0 -1.511 -0.337 -0.863
10 HO'5 H 5HO* N N N 0 0.187 0.549 3.931
11 H5'1 H 1H5* N N N 0 0.169 1.554 1.871
12 H5'2 H 2H5* N N N 0 1.616 0.552 2.138
13 H4' H H4* N N N 0 0.514 -1.339 0.949
14 HN'4 H 4HN* N N N 0 -1.646 -1.185 0.966
15 H3' H H3* N N N 0 1.344 1.191 -0.225
16 HO'3 H 3HO* N N N 0 2.003 -0.259 -1.895
17 H2' H H2* N N N 0 -0.691 1.64 -1.309
18 HO'2 H 2HO* N N N 0 -0.885 0.418 -3.272
19 H1'1 H 1H1* N N N 0 -2.495 0.053 -1.118
20 H1'2 H 2H1* N N N 0 -1.385 -1.349 -1.25