Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : IRN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 31


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C5 C C5 N Y N 0 4.147 -1.082 0.699
2 C4 C C4 N Y N 0 4.548 -2.247 0.156
3 N3 N N3 N Y N 0 3.554 -2.706 -0.619
4 C2 C C2 N Y N 0 2.554 -1.87 -0.578
5 N1 N N1 N Y N 0 2.881 -0.844 0.238
6 C1' C C1' R N N 0 2.039 0.311 0.563
7 O4' O O4' N N N 0 0.649 -0.073 0.616
8 C2' C C2' R N N 0 2.083 1.356 -0.581
9 O2' O O2' N N N 0 3.191 2.243 -0.419
10 C3' C C3' S N N 0 0.743 2.106 -0.386
11 O3' O O3' N N N 0 0.949 3.317 0.343
12 C4' C C4' R N N 0 -0.124 1.125 0.428
13 C5' C C5' N N N 0 -1.406 0.801 -0.343
14 O5' O O5' N N N 0 -2.247 -0.029 0.46
15 P P P N N N 0 -3.682 -0.564 -0.037
16 O6 O O6 N N N 0 -4.682 0.683 -0.234
17 O7 O O7 N N N 0 -3.524 -1.277 -1.324
18 O8 O O8 N N N 0 -4.29 -1.571 1.063
19 H5 H H5 N N N 0 4.715 -0.457 1.373
20 H4 H H4 N N N 0 5.501 -2.728 0.317
21 H2 H H2 N N N 0 1.618 -1.98 -1.105
22 H1' H H1' N N N 0 2.353 0.759 1.505
23 H2' H H2' N N N 0 2.117 0.867 -1.554
24 HO2' H HO2' N N N 0 3.261 2.915 -1.11
25 H3' H H3' N N N 0 0.279 2.316 -1.35
26 HO3' H HO3' N N N 0 1.535 3.947 -0.099
27 H4' H H4' N N N 0 -0.371 1.562 1.395
28 H5' H H5' N N N 0 -1.929 1.726 -0.582
29 H5'A H H5'A N N N 0 -1.153 0.278 -1.265
30 HO6 H HO6 N N N 0 -4.832 1.197 0.572
31 HO8 H HO8 N N N 0 -5.155 -1.933 0.829