Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : IV0

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C7 C C1 N Y N 0 2.974 -1.055 0.506
2 C8 C C2 N Y N 0 3.6 -1.151 1.692
3 C10 C C3 N N N 0 -1.676 0.502 0.313
4 C13 C C4 N Y N 0 -5.924 -0.142 -0.395
5 C17 C C5 N N N 0 1.528 -1.384 0.237
6 C20 C C6 N Y N 0 -5.291 -1.03 -1.255
7 C21 C C7 N Y N 0 -7.194 -0.432 0.085
8 C22 C C8 N Y N 0 6.271 0.36 -1.793
9 C24 C C9 N Y N 0 -7.824 -1.601 -0.293
10 C26 C C10 N Y N 0 8.582 0.64 -0.282
11 C28 C C11 N Y N 0 -7.19 -2.484 -1.149
12 C1 C C12 N Y N 0 -3.945 1.196 0.201
13 N2 N N1 N Y N 0 3.863 -0.609 -0.394
14 C3 C C13 N Y N 0 5.016 -0.435 0.207
15 N4 N N2 N Y N 0 -5.28 1.042 -0.009
16 N5 N N3 N N N 0 -2.969 0.208 0.072
17 O6 O O1 N Y N 0 4.878 -0.764 1.503
18 N9 N N4 N Y N 0 -5.897 2.277 0.23
19 C11 C C14 N Y N 0 -3.735 2.494 0.556
20 C12 C C15 N Y N 0 -4.974 3.141 0.569
21 C14 C C16 N Y N 0 6.259 0.047 -0.433
22 O15 O O2 N N N 0 -1.36 1.629 0.643
23 N16 N N5 N N N 0 -0.733 -0.453 0.188
24 C18 C C17 N N N 0 0.672 -0.133 0.449
25 C19 C C18 N N N 0 2.988 -1.605 2.992
26 C23 C C19 N Y N 0 7.425 0.191 0.321
27 C25 C C20 N Y N 0 -5.926 -2.198 -1.629
28 C27 C C21 N Y N 0 7.435 0.808 -2.384
29 C29 C C22 N Y N 0 8.585 0.954 -1.63
30 H1 H H1 N N N 0 1.419 -1.728 -0.792
31 H2 H H2 N N N 0 1.2 -2.168 0.919
32 H3 H H3 N N N 0 -4.303 -0.807 -1.63
33 H4 H H4 N N N 0 -7.689 0.257 0.754
34 H5 H H5 N N N 0 5.373 0.247 -2.382
35 H6 H H6 N N N 0 -8.812 -1.827 0.08
36 H7 H H7 N N N 0 9.483 0.756 0.301
37 H8 H H8 N N N 0 -7.684 -3.398 -1.442
38 H9 H H9 N N N 0 -3.221 -0.691 -0.191
39 H10 H H10 N N N 0 -2.781 2.942 0.791
40 H11 H H11 N N N 0 -5.141 4.179 0.814
41 H12 H H12 N N N 0 -0.985 -1.352 -0.076
42 H13 H H13 N N N 0 0.781 0.211 1.477
43 H14 H H14 N N N 0 1.0 0.651 -0.234
44 H15 H H15 N N N 0 3.102 -2.685 3.089
45 H16 H H16 N N N 0 3.491 -1.111 3.823
46 H17 H H17 N N N 0 1.929 -1.349 3.004
47 H18 H H18 N N N 0 7.422 -0.05 1.374
48 H19 H H19 N N N 0 -5.434 -2.888 -2.298
49 H20 H H20 N N N 0 7.447 1.046 -3.437
50 H21 H H21 N N N 0 9.493 1.305 -2.097