Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : IVS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 81


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C57 C C57 N N N 0 -2.705 0.022 7.929
2 O56 O O56 N N N 0 -2.212 -0.346 6.614
3 C53 C C53 N N N 0 -0.977 0.017 6.234
4 O75 O O75 N N N 0 -0.276 0.651 6.986
5 C52 C C52 N N N 0 -0.466 -0.364 4.869
6 N22 N N22 N N N 0 0.605 0.357 2.277
7 C51 C C51 S N N 0 0.956 0.168 4.69
8 O72 O O72 N N N 0 0.951 1.592 4.815
9 C23 C C23 S N N 0 1.476 -0.219 3.304
10 C58 C C58 N N N 0 2.899 0.314 3.125
11 C21 C C21 N N N 0 0.332 -0.338 1.156
12 O19 O O19 N N N 0 0.716 -1.484 1.046
13 C20 C C20 S N N 0 -0.449 0.305 0.04
14 N19 N N19 N N N 0 -0.017 -0.252 -1.243
15 C18 C C18 N N N 0 -0.074 0.501 -2.358
16 O36 O O36 N N N 0 -0.401 1.666 -2.286
17 C17 C C17 S N N 0 0.269 -0.103 -3.695
18 N16 N N16 N N N 0 -0.449 0.609 -4.753
19 C12 C C12 N N N 0 -0.807 -0.038 -5.88
20 O15 O O15 N N N 0 -0.533 -1.212 -6.017
21 C10 C C10 N N N 0 -1.547 0.695 -6.968
22 C2 C C2 N N N 0 -1.83 -0.262 -8.127
23 C6 C C6 N N N 0 -2.581 0.482 -9.233
24 C76 C C76 N N N 0 -4.128 -0.511 8.108
25 C38 C C38 N N N 0 -1.941 0.031 0.239
26 C60 C C60 N N N 0 3.477 -0.206 1.808
27 C67 C C67 N N N 0 4.833 0.452 1.55
28 C63 C C63 N N N 0 3.655 -1.723 1.893
29 C40 C C40 N N N 0 -2.177 -1.477 0.317
30 C44 C C44 N N N 0 -2.411 0.688 1.539
31 C25 C C25 N N N 0 1.776 0.012 -3.935
32 C27 C C27 N N N 0 2.204 1.473 -3.792
33 C31 C C31 N N N 0 2.523 -0.841 -2.908
34 C1 C C1 N N N 0 -0.508 -0.798 -8.681
35 H571 H 1H57 N N N 0 -2.71 1.108 8.024
36 H572 H 2H57 N N N 0 -2.058 -0.406 8.693
37 H521 H 1H52 N N N 0 -0.461 -1.45 4.774
38 H522 H 2H52 N N N 0 -1.113 0.064 4.105
39 H511 H 1H51 N N N 0 1.604 -0.26 5.454
40 HO72 H HO72 N N N 0 0.367 1.931 4.123
41 H231 H 1H23 N N N 0 1.48 -1.305 3.209
42 H581 H 1H58 N N N 0 2.879 1.403 3.108
43 H582 H 2H58 N N N 0 3.521 -0.024 3.954
44 H221 H 1H22 N N N 0 0.225 1.241 2.404
45 H201 H 1H20 N N N 0 -0.272 1.38 0.047
46 H191 H 1H19 N N N 0 0.308 -1.165 -1.29
47 H171 H 1H17 N N N 0 -0.019 -1.154 -3.703
48 H161 H 1H16 N N N 0 -0.668 1.548 -4.643
49 H101 H 1H10 N N N 0 -2.488 1.077 -6.574
50 H102 H 2H10 N N N 0 -0.938 1.526 -7.325
51 HC21 H 1HC2 N N N 0 -2.439 -1.093 -7.771
52 HC61 H 1HC6 N N N 0 -2.783 -0.2 -10.058
53 HC62 H 2HC6 N N N 0 -3.523 0.864 -8.838
54 HC63 H 3HC6 N N N 0 -1.973 1.313 -9.589
55 H761 H 1H76 N N N 0 -4.498 -0.234 9.095
56 H762 H 2H76 N N N 0 -4.776 -0.081 7.344
57 H763 H 3H76 N N N 0 -4.124 -1.596 8.013
58 H601 H 1H60 N N N 0 2.795 0.033 0.992
59 H671 H 1H67 N N N 0 5.245 0.081 0.612
60 H672 H 2H67 N N N 0 4.706 1.533 1.489
61 H673 H 3H67 N N N 0 5.515 0.211 2.366
62 H631 H 1H63 N N N 0 4.405 -1.959 2.648
63 H632 H 2H63 N N N 0 2.706 -2.185 2.168
64 H633 H 3H63 N N N 0 3.979 -2.106 0.926
65 H381 H 1H38 N N N 0 -2.501 0.444 -0.599
66 H401 H 1H40 N N N 0 -3.24 -1.672 0.458
67 H402 H 2H40 N N N 0 -1.842 -1.945 -0.608
68 H403 H 3H40 N N N 0 -1.617 -1.89 1.156
69 H441 H 1H44 N N N 0 -1.975 0.164 2.389
70 H442 H 2H44 N N N 0 -2.095 1.731 1.554
71 H443 H 3H44 N N N 0 -3.498 0.637 1.599
72 H251 H 1H25 N N N 0 2.012 -0.339 -4.939
73 H271 H 1H27 N N N 0 3.277 1.556 -3.963
74 H272 H 2H27 N N N 0 1.672 2.081 -4.523
75 H273 H 3H27 N N N 0 1.968 1.825 -2.787
76 H311 H 1H31 N N N 0 2.24 -0.529 -1.902
77 H312 H 2H31 N N N 0 2.264 -1.89 -3.049
78 H313 H 3H31 N N N 0 3.597 -0.711 -3.04
79 HC11 H 1HC1 N N N 0 0.099 0.032 -9.037
80 HC12 H 2HC1 N N N 0 0.026 -1.329 -7.893
81 HC13 H 3HC1 N N N 0 -0.71 -1.481 -9.506