Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : J2V

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C17 C C1 N Y N 0 -1.129 -1.568 -0.923
2 C16 C C2 N Y N 0 -1.734 -0.802 0.071
3 C15 C C3 N Y N 0 2.049 1.258 -0.174
4 C19 C C4 N Y N 0 -1.974 -3.516 -0.02
5 C20 C C5 N Y N 0 -2.603 -2.821 1.007
6 C27 C C10 N N N 0 -1.419 -5.525 -1.158
7 C21 C C6 N Y N 0 -2.489 -1.445 1.06
8 C23 C C7 N N N 0 5.591 0.493 -0.445
9 C11 C C8 N Y N 0 1.089 -0.281 1.404
10 C12 C C9 N Y N 0 2.348 -0.81 1.59
11 C1 C C11 N Y N 0 -2.644 1.667 -0.105
12 C2 C C12 N Y N 0 -2.022 2.925 -0.013
13 C3 C C13 N Y N 0 -2.801 4.072 -0.159
14 C4 C C14 N Y N 0 -4.155 3.92 -0.39
15 C5 C C15 N Y N 0 -4.7 2.647 -0.469
16 N6 N N1 N Y N 0 -3.951 1.575 -0.329
17 C7 C C16 N Y N 0 -1.58 0.671 0.083
18 C8 C C17 N Y N 0 -0.41 1.376 0.273
19 N9 N N2 N Y N 0 -0.68 2.722 0.22
20 C10 C C18 N Y N 0 0.921 0.78 0.502
21 N13 N N3 N Y N 0 3.388 -0.34 0.926
22 C14 C C19 N Y N 0 3.278 0.664 0.069
23 N18 N N4 N Y N 0 -1.268 -2.878 -0.939
24 N22 N N5 N N N 0 4.412 1.129 -0.597
25 O24 O O1 N N N 0 5.687 -0.426 0.34
26 C25 C C20 N N N 0 6.788 0.924 -1.252
27 O26 O O2 N N N 0 -2.087 -4.866 -0.081
28 H35 H H1 N N N 0 -0.544 -1.082 -1.691
29 H34 H H2 N N N 0 1.963 2.074 -0.876
30 H36 H H3 N N N 0 -3.178 -3.35 1.753
31 H37 H H4 N N N 0 -2.97 -0.88 1.844
32 H32 H H5 N N N 0 0.243 -0.679 1.944
33 H33 H H6 N N N 0 2.484 -1.627 2.283
34 H42 H H7 N N N 0 -0.349 -5.323 -1.101
35 H44 H H8 N N N 0 -1.589 -6.6 -1.089
36 H43 H H9 N N N 0 -1.808 -5.156 -2.107
37 H28 H H10 N N N 0 -2.357 5.054 -0.093
38 H29 H H11 N N N 0 -4.786 4.789 -0.507
39 H30 H H12 N N N 0 -5.759 2.534 -0.649
40 H31 H H13 N N N 0 -0.022 3.426 0.324
41 H38 H H14 N N N 0 4.352 1.91 -1.168
42 H39 H H15 N N N 0 7.643 0.298 -0.996
43 H41 H H17 N N N 0 7.021 1.965 -1.029
44 H40 H H16 N N N 0 6.568 0.82 -2.314