Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : J34

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 189


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O23 O O23 N N N 0 18.032 -2.681 -2.753
2 C12 C C12 N N N 0 17.02 -2.256 -2.229
3 N2 N N2 N N N 0 16.989 -0.998 -1.746
4 C11 C C11 N N N 0 18.174 -0.144 -1.852
5 C10 C C10 N N N 0 17.874 1.223 -1.232
6 C9 C C9 N N N 0 19.111 2.116 -1.343
7 C8 C C8 N N N 0 18.812 3.482 -0.723
8 C1 C C1 S N N 0 20.049 4.375 -0.834
9 N N N N N N 0 21.132 3.811 -0.024
10 C2 C C2 N N N 0 22.416 4.089 -0.329
11 O6 O O6 N N N 0 22.674 4.807 -1.275
12 N1 N N1 N N N 0 23.412 3.57 0.416
13 C3 C C3 S N N 0 24.807 3.872 0.085
14 C7 C C7 N N N 0 25.292 2.912 -0.971
15 O5 O O5 N N N 0 24.548 2.064 -1.404
16 O4 O O4 N N N 0 26.549 3.001 -1.432
17 C4 C C4 N N N 0 25.671 3.728 1.339
18 C5 C C5 N N N 0 25.26 4.786 2.365
19 C6 C C6 N N N 0 26.112 4.644 3.601
20 O3 O O3 N N N 0 26.96 3.786 3.655
21 O2 O O2 N N N 0 25.928 5.473 4.641
22 C C C N N N 0 19.717 5.758 -0.335
23 O1 O O1 N N N 0 18.748 6.471 -0.93
24 O O O N N N 0 20.323 6.224 0.6
25 N3 N N3 N N N 0 15.928 -3.041 -2.136
26 C13 C C13 N Y N 0 15.918 -4.303 -2.747
27 C18 C C18 N Y N 0 15.074 -5.303 -2.27
28 C17 C C17 N Y N 0 15.068 -6.548 -2.877
29 C16 C C16 N Y N 0 15.899 -6.796 -3.954
30 C15 C C15 N Y N 0 16.738 -5.804 -4.427
31 C14 C C14 N Y N 0 16.745 -4.557 -3.831
32 O7 O O7 N N N 0 14.258 -5.057 -1.21
33 C19 C C19 N N N 0 13.419 -6.129 -0.775
34 C20 C C20 N N N 0 12.579 -5.668 0.418
35 N4 N N4 N N N 0 11.663 -4.609 -0.011
36 C21 C C21 N N N 0 10.82 -4.047 0.878
37 O22 O O22 N N N 0 10.82 -4.418 2.033
38 C22 C C22 N N N 0 9.877 -2.957 0.438
39 C23 C C23 N N N 0 9.037 -2.496 1.63
40 O8 O O8 N N N 0 8.143 -1.462 1.213
41 C24 C C24 N N N 0 7.308 -0.959 2.257
42 C25 C C25 N N N 0 6.398 0.137 1.699
43 O9 O O9 N N N 0 5.503 -0.43 0.74
44 C26 C C26 N N N 0 4.604 0.513 0.154
45 C27 C C27 N N N 0 3.698 -0.201 -0.851
46 O10 O O10 N N N 0 2.867 -1.137 -0.162
47 C28 C C28 N N N 0 1.978 -1.862 -1.014
48 C29 C C29 N N N 0 1.142 -2.829 -0.174
49 O11 O O11 N N N 0 0.299 -2.087 0.709
50 C30 C C30 N N N 0 -0.529 -2.901 1.543
51 C31 C C31 N N N 0 -1.384 -2.005 2.442
52 O12 O O12 N N N 0 -2.289 -1.247 1.636
53 C32 C C32 N N N 0 -3.139 -0.374 2.382
54 C33 C C33 N N N 0 -4.06 0.383 1.423
55 O13 O O13 N N N 0 -4.939 -0.541 0.779
56 C34 C C34 N N N 0 -5.847 0.066 -0.144
57 C35 C C35 N N N 0 -6.734 -1.011 -0.77
58 O14 O O14 N N N 0 -7.558 -1.597 0.241
59 C36 C C36 N N N 0 -8.43 -2.621 -0.242
60 C37 C C37 N N N 0 -9.259 -3.173 0.92
61 O15 O O15 N N N 0 -10.12 -2.148 1.42
62 C38 C C38 N N N 0 -10.943 -2.562 2.513
63 C39 C C39 N N N 0 -11.817 -1.391 2.965
64 O16 O O16 N N N 0 -12.726 -1.043 1.918
65 C40 C C40 N N N 0 -13.594 0.045 2.24
66 C41 C C41 N N N 0 -14.518 0.329 1.053
67 O17 O O17 N N N 0 -15.379 -0.792 0.842
68 C42 C C42 N N N 0 -16.288 -0.629 -0.249
69 C43 C C43 N N N 0 -17.155 -1.883 -0.381
70 O18 O O18 N N N 0 -17.979 -2.016 0.779
71 C44 C C44 N N N 0 -18.833 -3.162 0.757
72 C45 C C45 N N N 0 -19.664 -3.204 2.041
73 O19 O O19 N N N 0 -20.542 -2.077 2.077
74 C46 C C46 N N N 0 -21.368 -2.021 3.242
75 C47 C C47 N N N 0 -22.262 -0.781 3.174
76 N5 N N5 N N N 0 -23.19 -0.91 2.048
77 C48 C C48 N N N 0 -24.079 0.07 1.792
78 O21 O O21 N N N 0 -24.111 1.058 2.494
79 C49 C C49 N N N 0 -25.034 -0.063 0.633
80 C50 C C50 N N N 0 -25.928 1.177 0.565
81 C51 C C51 N N N 0 -26.897 1.042 -0.611
82 C52 C C52 N N N 0 -27.792 2.282 -0.68
83 C53 C C53 S N N 0 -28.761 2.147 -1.856
84 C56 C C56 S N N 0 -29.759 3.321 -1.878
85 C55 C C55 R N N 0 -30.09 3.78 -3.304
86 C54 C C54 N N N 0 -29.344 2.957 -4.373
87 S S S N N N 0 -27.875 2.339 -3.456
88 N7 N N7 N N N 0 -29.133 4.501 -1.261
89 C57 C C57 N N N 0 -29.095 5.495 -2.158
90 O20 O O20 N N N 0 -28.628 6.591 -1.914
91 N6 N N6 N N N 0 -29.618 5.172 -3.349
92 H22 H H22 N N N 0 16.182 -0.659 -1.328
93 H20 H H20 N N N 0 19.006 -0.608 -1.323
94 H21 H H21 N N N 0 18.437 -0.016 -2.902
95 H18 H H18 N N N 0 17.042 1.687 -1.761
96 H19 H H19 N N N 0 17.611 1.095 -0.182
97 H16 H H16 N N N 0 19.943 1.651 -0.814
98 H17 H H17 N N N 0 19.375 2.243 -2.393
99 H14 H H14 N N N 0 17.98 3.947 -1.252
100 H15 H H15 N N N 0 18.549 3.354 0.327
101 H H H N N N 0 20.365 4.43 -1.875
102 H6 H H6 N N N 0 20.926 3.238 0.73
103 H7 H H7 N N N 0 23.206 2.997 1.171
104 H1 H H1 N N N 0 24.879 4.892 -0.291
105 H13 H H13 N N N 0 26.814 2.364 -2.11
106 H8 H H8 N N N 0 25.531 2.735 1.765
107 H9 H H9 N N N 0 26.72 3.865 1.076
108 H10 H H10 N N N 0 25.401 5.779 1.939
109 H11 H H11 N N N 0 24.212 4.649 2.629
110 H12 H H12 N N N 0 26.498 5.343 5.412
111 H5 H H5 N N N 0 18.571 7.353 -0.575
112 H23 H H23 N N N 0 15.149 -2.733 -1.647
113 H27 H H27 N N N 0 14.415 -7.325 -2.509
114 H26 H H26 N N N 0 15.894 -7.768 -4.425
115 H25 H H25 N N N 0 17.386 -6.003 -5.268
116 H24 H H24 N N N 0 17.397 -3.783 -4.207
117 H28 H H28 N N N 0 12.759 -6.428 -1.59
118 H29 H H29 N N N 0 14.037 -6.977 -0.479
119 H30 H H30 N N N 0 12.005 -6.51 0.805
120 H31 H H31 N N N 0 13.236 -5.286 1.199
121 H32 H H32 N N N 0 11.663 -4.312 -0.934
122 H33 H H33 N N N 0 10.451 -2.115 0.05
123 H34 H H34 N N N 0 9.22 -3.339 -0.344
124 H35 H H35 N N N 0 8.464 -3.338 2.018
125 H36 H H36 N N N 0 9.694 -2.114 2.411
126 H37 H H37 N N N 0 6.699 -1.769 2.658
127 H38 H H38 N N N 0 7.93 -0.545 3.051
128 H39 H H39 N N N 0 5.825 0.582 2.512
129 H40 H H40 N N N 0 7.005 0.905 1.219
130 H41 H H41 N N N 0 3.993 0.967 0.935
131 H42 H H42 N N N 0 5.174 1.289 -0.357
132 H43 H H43 N N N 0 3.074 0.532 -1.362
133 H44 H H44 N N N 0 4.311 -0.728 -1.582
134 H45 H H45 N N N 0 1.318 -1.163 -1.528
135 H51 H H51 N N N 0 -1.949 -2.624 3.139
136 H46 H H46 N N N 0 2.556 -2.424 -1.748
137 H47 H H47 N N N 0 0.528 -3.444 -0.832
138 H48 H H48 N N N 0 1.804 -3.47 0.409
139 H49 H H49 N N N 0 -1.178 -3.517 0.921
140 H50 H H50 N N N 0 0.099 -3.543 2.162
141 H52 H H52 N N N 0 -0.738 -1.327 2.999
142 H53 H H53 N N N 0 -3.74 -0.959 3.078
143 H54 H H54 N N N 0 -2.53 0.339 2.938
144 H55 H H55 N N N 0 -4.646 1.113 1.981
145 H56 H H56 N N N 0 -3.46 0.897 0.672
146 H57 H H57 N N N 0 -6.47 0.789 0.383
147 H58 H H58 N N N 0 -5.284 0.573 -0.927
148 H59 H H59 N N N 0 -7.365 -0.562 -1.537
149 H60 H H60 N N N 0 -6.108 -1.782 -1.22
150 H61 H H61 N N N 0 -9.096 -2.204 -0.998
151 H62 H H62 N N N 0 -7.839 -3.424 -0.681
152 H63 H H63 N N N 0 -9.86 -4.013 0.57
153 H64 H H64 N N N 0 -8.593 -3.508 1.714
154 H65 H H65 N N N 0 -11.578 -3.389 2.197
155 H66 H H66 N N N 0 -10.311 -2.885 3.341
156 H67 H H67 N N N 0 -12.38 -1.679 3.853
157 H68 H H68 N N N 0 -11.186 -0.534 3.197
158 H69 H H69 N N N 0 -14.193 -0.213 3.113
159 H70 H H70 N N N 0 -12.999 0.933 2.457
160 H71 H H71 N N N 0 -15.118 1.214 1.263
161 H72 H H72 N N N 0 -13.919 0.5 0.159
162 H73 H H73 N N N 0 -16.924 0.236 -0.066
163 H74 H H74 N N N 0 -15.725 -0.478 -1.17
164 H75 H H75 N N N 0 -17.786 -1.796 -1.266
165 H76 H H76 N N N 0 -16.515 -2.76 -0.475
166 H77 H H77 N N N 0 -19.498 -3.102 -0.104
167 H78 H H78 N N N 0 -18.227 -4.065 0.686
168 H79 H H79 N N N 0 -20.25 -4.122 2.065
169 H80 H H80 N N N 0 -18.999 -3.174 2.905
170 H81 H H81 N N N 0 -21.989 -2.915 3.291
171 H82 H H82 N N N 0 -20.739 -1.966 4.131
172 H83 H H83 N N N 0 -22.827 -0.689 4.102
173 H84 H H84 N N N 0 -21.644 0.106 3.036
174 H85 H H85 N N N 0 -23.164 -1.701 1.486
175 H86 H H86 N N N 0 -24.469 -0.154 -0.294
176 H87 H H87 N N N 0 -25.652 -0.95 0.771
177 H88 H H88 N N N 0 -26.493 1.268 1.492
178 H89 H H89 N N N 0 -25.31 2.064 0.427
179 H90 H H90 N N N 0 -26.332 0.95 -1.539
180 H91 H H91 N N N 0 -27.515 0.155 -0.473
181 H92 H H92 N N N 0 -28.357 2.373 0.248
182 H93 H H93 N N N 0 -27.174 3.169 -0.818
183 H2 H H2 N N N 0 -29.287 1.193 -1.814
184 H4 H H4 N N N 0 -30.672 3.05 -1.348
185 H3 H H3 N N N 0 -31.165 3.734 -3.475
186 H95 H H95 N N N 0 -29.96 2.127 -4.721
187 H94 H H94 N N N 0 -29.041 3.59 -5.206
188 H97 H H97 N N N 0 -28.803 4.551 -0.35
189 H96 H H96 N N N 0 -29.677 5.762 -4.117