Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : J3B

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 -1.329 -0.586 0.405
2 C12 C C2 N Y N 0 -0.942 0.55 -0.298
3 C15 C C3 N N N 0 1.293 -0.184 -0.629
4 N01 N N1 N N N 0 -5.455 -1.429 0.944
5 C04 C C4 N N N 0 -5.07 -0.298 0.256
6 N05 N N2 N N N 0 -5.971 0.513 -0.221
7 C07 C C5 N Y N 0 -3.633 -0.004 0.06
8 C08 C C6 N Y N 0 -2.666 -0.864 0.584
9 N13 N N3 N N N 0 0.413 0.826 -0.484
10 O16 O O1 N N N 0 0.897 -1.329 -0.695
11 C17 C C7 R N N 0 2.769 0.108 -0.709
12 C19 C C8 N N N 0 3.539 -1.205 -0.872
13 C22 C C9 N N N 0 5.033 -0.918 -0.675
14 C25 C C10 N N N 0 5.269 -0.528 0.785
15 N28 N N4 N N N 0 4.342 0.521 1.188
16 C30 C C11 N N N 0 3.209 0.806 0.545
17 O31 O O2 N N N 0 2.495 1.676 0.998
18 C32 C C12 N Y N 0 -1.903 1.411 -0.817
19 C34 C C13 N Y N 0 -3.242 1.141 -0.636
20 H1 H H1 N N N 0 -0.581 -1.253 0.806
21 H2 H H2 N N N 0 -4.784 -2.032 1.299
22 H3 H H3 N N N 0 -6.397 -1.621 1.072
23 H4 H H4 N N N 0 -5.701 1.309 -0.705
24 H5 H H5 N N N 0 -2.966 -1.747 1.13
25 H6 H H6 N N N 0 0.722 1.746 -0.508
26 H7 H H7 N N N 0 2.965 0.751 -1.568
27 H8 H H8 N N N 0 3.202 -1.923 -0.124
28 H9 H H9 N N N 0 3.371 -1.608 -1.87
29 H10 H H10 N N N 0 5.611 -1.811 -0.913
30 H11 H H11 N N N 0 5.338 -0.101 -1.328
31 H12 H H12 N N N 0 5.122 -1.402 1.419
32 H13 H H13 N N N 0 6.291 -0.167 0.9
33 H14 H H14 N N N 0 4.563 1.046 1.974
34 H15 H H15 N N N 0 -1.6 2.293 -1.362
35 H16 H H16 N N N 0 -3.988 1.807 -1.042