Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : J6L

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 51


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N N N 0 5.371 0.691 -1.559
2 C5 C C2 N N N 0 4.105 1.036 -1.333
3 C6 C C3 N Y N 0 3.427 0.457 -0.154
4 C8 C C4 N N N 0 -0.751 0.307 0.005
5 C13 C C5 N Y N 0 2.25 -0.664 2.107
6 C15 C C6 N N N 0 -0.017 -0.057 1.232
7 C17 C C7 N N N 0 5.819 -1.704 -1.119
8 C1 C C8 N N N 0 -7.131 0.695 -0.259
9 C1' C C9 N Y N 0 -2.732 -1.179 -0.28
10 C11 C C10 N Y N 0 4.21 -0.128 0.848
11 C14 C C11 N Y N 0 1.454 -0.087 1.116
12 C16 C C12 N N N 0 6.064 -0.273 -0.633
13 C18 C C13 N N N 0 7.567 0.012 -0.639
14 C2 C C14 N Y N 0 3.611 -0.683 1.971
15 C2' C C15 N Y N 0 -4.099 -1.367 -0.369
16 C23 C C16 N N N 0 -3.662 -3.69 -0.636
17 C3' C C17 N Y N 0 -4.961 -0.278 -0.275
18 C4' C C18 N Y N 0 -4.452 0.999 -0.094
19 C5' C C19 N Y N 0 -3.085 1.194 -0.004
20 C9 C C20 N Y N 0 2.036 0.486 -0.028
21 CAA C C21 N N N 0 -0.045 0.837 -1.028
22 CAB C C22 N Y N 0 -2.217 0.102 -0.097
23 CAC C C23 N N N 0 -3.532 3.515 0.259
24 O2' O O1 N N N 0 -4.603 -2.619 -0.548
25 O3' O O2 N N N 0 -6.305 -0.467 -0.363
26 O4 O O3 N N N 0 -0.59 -0.317 2.276
27 O5 O O4 N N N 0 5.559 -0.141 0.696
28 O5' O O5 N N N 0 -2.586 2.447 0.173
29 OP3 O O6 N N N 0 1.269 1.056 -0.975
30 H17 H H1 N N N 0 5.899 1.099 -2.409
31 H18 H H4 N N N 0 3.589 1.72 -1.99
32 H10 H H5 N N N 0 1.79 -1.096 2.983
33 H11 H H6 N N N 0 6.216 -1.817 -2.128
34 H13 H H7 N N N 0 6.319 -2.405 -0.451
35 H12 H H8 N N N 0 4.749 -1.907 -1.125
36 H2 H H9 N N N 0 -6.965 1.174 0.706
37 H3 H H10 N N N 0 -6.88 1.391 -1.059
38 H1 H H11 N N N 0 -8.178 0.404 -0.345
39 H19 H H12 N N N 0 -2.064 -2.026 -0.348
40 H15 H H13 N N N 0 7.745 1.033 -0.302
41 H16 H H14 N N N 0 8.071 -0.685 0.031
42 H14 H H15 N N N 0 7.956 -0.11 -1.65
43 H9 H H16 N N N 0 4.221 -1.131 2.741
44 H20 H H17 N N N 0 -2.994 -3.52 -1.48
45 H21 H H18 N N N 0 -3.079 -3.738 0.284
46 H22 H H19 N N N 0 -4.194 -4.631 -0.777
47 H4 H H20 N N N 0 -5.123 1.842 -0.022
48 H8 H H21 N N N 0 -0.573 1.091 -1.936
49 H6 H H22 N N N 0 -4.114 3.559 -0.662
50 H5 H H23 N N N 0 -4.199 3.343 1.103
51 H7 H H24 N N N 0 -3.003 4.458 0.4