Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : J8D

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C01 C C1 N N N 0 -6.507 0.923 0.003
2 O6 O O1 N N N 0 -5.717 -0.268 0.005
3 C13 C C2 N Y N 0 -4.368 -0.112 0.006
4 C12 C C3 N Y N 0 -3.539 -1.234 0.007
5 C9 C C8 N N N 0 -0.147 0.378 0.008
6 C11 C C4 N Y N 0 -2.167 -1.078 0.008
7 O5 O O2 N N N 0 -4.082 -2.48 0.009
8 C14 C C5 N Y N 0 -3.817 1.161 -0.001
9 C15 C C6 N Y N 0 -2.449 1.324 -0.001
10 C10 C C7 N Y N 0 -1.612 0.206 0.007
11 O4 O O3 N N N 0 0.632 -0.716 0.015
12 C6 C C9 N Y N 0 1.98 -0.641 0.016
13 C1 C C10 N Y N 0 2.754 -1.791 0.023
14 C2 C C11 N Y N 0 4.137 -1.696 0.024
15 O1 O O4 N N N 0 4.888 -2.827 0.031
16 C3 C C12 N Y N 0 4.762 -0.454 0.017
17 C4 C C13 N Y N 0 4.007 0.704 0.011
18 O2 O O5 N N N 0 4.615 1.917 0.004
19 C5 C C14 N Y N 0 2.609 0.615 0.009
20 C7 C C15 N N N 0 1.766 1.823 0.002
21 O3 O O6 N N N 0 2.259 2.94 -0.003
22 C8 C C16 N N N 0 0.363 1.639 -0.005
23 H1 H H1 N N N 0 -7.564 0.658 0.003
24 H2 H H2 N N N 0 -6.28 1.511 0.892
25 H3 H H3 N N N 0 -6.279 1.509 -0.888
26 H4 H H4 N N N 0 -1.523 -1.945 0.01
27 H5 H H5 N N N 0 -4.238 -2.842 -0.874
28 H6 H H6 N N N 0 -4.463 2.027 -0.008
29 H7 H H7 N N N 0 -2.023 2.317 -0.007
30 H8 H H8 N N N 0 2.28 -2.761 0.029
31 H9 H H9 N N N 0 5.107 -3.159 -0.851
32 H10 H H10 N N N 0 5.841 -0.394 0.018
33 H11 H H11 N N N 0 4.792 2.264 -0.881
34 H12 H H12 N N N 0 -0.298 2.493 -0.011