Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JAV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C16 C C1 N Y N 0 -3.45 0.215 0.356
2 C17 C C2 N Y N 0 -2.723 1.065 1.169
3 C18 C C3 N Y N 0 -2.914 2.432 1.089
4 C19 C C4 N Y N 0 -3.832 2.952 0.198
5 C20 C C5 N Y N 0 -4.562 2.101 -0.619
6 C21 C C6 N Y N 0 -4.369 0.729 -0.538
7 C01 C C7 N N N 0 5.303 -2.681 0.062
8 C02 C C8 N Y N 0 4.089 -1.794 -0.031
9 C03 C C9 N Y N 0 4.234 -0.422 0.02
10 C04 C C10 N Y N 0 3.115 0.406 -0.065
11 C05 C C11 N Y N 0 1.849 -0.15 -0.203
12 C06 C C12 N Y N 0 1.703 -1.536 -0.255
13 C07 C C13 N Y N 0 2.833 -2.357 -0.173
14 C09 C C14 N N N 0 0.361 -2.135 -0.4
15 C23 C C15 N Y N 0 3.277 1.88 -0.008
16 C24 C C16 N Y N 0 4.546 2.44 0.124
17 C25 C C17 N Y N 0 4.69 3.812 0.17
18 C26 C C18 N Y N 0 3.579 4.63 0.086
19 C27 C C19 N Y N 0 2.316 4.08 -0.046
20 C28 C C20 N Y N 0 2.16 2.71 -0.093
21 F08 F F1 N N N 0 2.697 -3.7 -0.228
22 N11 N N1 N N N 0 -0.726 -1.342 -0.483
23 N12 N N2 N N N 0 -1.999 -1.91 -0.621
24 O10 O O1 N N N 0 0.236 -3.343 -0.445
25 O14 O O2 N N N 0 -2.673 -1.783 1.75
26 O15 O O3 N N N 0 -4.386 -2.132 -0.036
27 O22 O O4 N N N 0 -5.466 2.61 -1.497
28 S13 S S1 N N N 0 -3.198 -1.526 0.454
29 H1 H H1 N N N 0 -2.005 0.661 1.867
30 H2 H H2 N N N 0 -2.345 3.094 1.725
31 H3 H H3 N N N 0 -3.981 4.02 0.136
32 H4 H H4 N N N 0 -4.936 0.065 -1.173
33 H5 H H5 N N N 0 5.698 -2.864 -0.938
34 H6 H H6 N N N 0 6.065 -2.192 0.669
35 H7 H H7 N N N 0 5.026 -3.63 0.521
36 H8 H H8 N N N 0 5.218 0.011 0.127
37 H9 H H9 N N N 0 0.98 0.489 -0.269
38 H10 H H10 N N N 0 5.414 1.802 0.191
39 H11 H H11 N N N 0 5.674 4.247 0.273
40 H12 H H12 N N N 0 3.697 5.703 0.122
41 H13 H H13 N N N 0 1.452 4.724 -0.111
42 H14 H H14 N N N 0 1.175 2.281 -0.201
43 H15 H H15 N N N 0 -0.627 -0.378 -0.447
44 H16 H H16 N N N 0 -2.178 -2.529 -1.347
45 H17 H H17 N N N 0 -5.098 2.81 -2.369