Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JBY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 1.102 -1.2 -0.152
2 C2 C C2 N N N 0 1.336 0.986 -0.304
3 N2 N N2 N N N 0 -0.106 -0.743 -0.052
4 N3 N N3 N N N 0 2.006 -0.187 -0.306
5 O2 O O2 N N N 0 1.803 2.105 -0.417
6 O3 O O N N N 0 3.506 0.962 1.511
7 C3 C C N N N 0 4.153 0.376 0.676
8 CA3 C CA3 S N N 0 3.456 -0.346 -0.448
9 CB3 C CB3 N N N 0 3.904 0.243 -1.788
10 CA1 C CA1 N N N 0 1.465 -2.662 -0.099
11 N1 N N N N N 0 0.246 -3.463 0.08
12 CA2 C CA2 N N N 0 -0.082 0.622 -0.134
13 CB2 C CB2 N N N 0 -1.159 1.479 -0.07
14 CG2 C CG2 N Y N 0 -2.52 0.941 -0.012
15 CD2 C CD2 N Y N 0 -2.726 -0.441 0.105
16 CE2 C CE2 N Y N 0 -4.003 -0.939 0.16
17 CZ C CZ N Y N 0 -5.092 -0.075 0.098
18 OH O O3 N N N 0 -6.353 -0.574 0.152
19 CE1 C CE1 N Y N 0 -4.893 1.296 -0.018
20 CD1 C CD1 N Y N 0 -3.622 1.806 -0.068
21 HA31 H H4 N N N 0 3.711 -1.405 -0.414
22 H5 H H5 N N N 0 3.399 -0.279 -2.601
23 H6 H H6 N N N 0 3.649 1.302 -1.823
24 H7 H H7 N N N 0 4.982 0.125 -1.894
25 HA1 H H8 N N N 0 1.954 -2.949 -1.03
26 HA2 H H9 N N N 0 2.142 -2.839 0.737
27 H H H1 N N N 0 0.463 -4.447 0.118
28 H2 H H2 N N Y 0 -0.26 -3.171 0.903
29 H13 H H13 N N N 0 -0.999 2.547 -0.062
30 H14 H H14 N N N 0 -1.882 -1.112 0.152
31 H16 H H16 N N N 0 -4.163 -2.003 0.25
32 H17 H H17 N N N 0 -5.743 1.962 -0.065
33 H18 H H18 N N N 0 -3.469 2.872 -0.154
34 OXT O OXT N N Y 0 5.493 0.367 0.75
35 HXT H HXT N N Y 0 5.895 0.844 1.489
36 HOH H H3 N N N 0 -6.71 -0.645 1.048