Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JCK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 3.356 2.352 1.233
2 C13 C C2 N Y N 0 0.515 4.026 -0.307
3 C15 C C3 N N N 0 -0.566 2.253 -1.726
4 C17 C C4 N Y N 0 -2.76 2.338 -0.524
5 C20 C C5 N N N 0 -4.815 -0.275 1.265
6 C22 C C6 N N N 0 -7.047 -1.216 1.067
7 C24 C C7 N N N 0 -6.656 -2.65 -0.882
8 C26 C C8 N Y N 0 -2.624 -0.361 0.057
9 C28 C C9 N Y N 0 4.8 -1.704 0.021
10 N01 N N1 N N N 0 5.772 -3.963 -0.244
11 C02 C C10 N Y N 0 4.712 -3.082 -0.158
12 N03 N N2 N Y N 0 3.404 -3.4 -0.23
13 N04 N N3 N Y N 0 2.631 -2.243 -0.1
14 C05 C C11 N Y N 0 3.421 -1.206 0.058
15 C06 C C12 N Y N 0 2.999 0.204 0.23
16 C07 C C13 N Y N 0 1.875 0.675 -0.438
17 C08 C C14 N Y N 0 1.487 2.0 -0.282
18 C09 C C15 N Y N 0 2.231 2.844 0.564
19 C11 C C16 N Y N 0 3.734 1.053 1.066
20 C12 C C17 N Y N 0 1.567 4.148 0.519
21 N14 N N4 N Y N 0 0.452 2.749 -0.796
22 C16 C C18 N Y N 0 -1.676 1.593 -0.95
23 C18 C C19 N Y N 0 -3.776 1.734 0.192
24 C19 C C20 N Y N 0 -3.708 0.384 0.484
25 N21 N N5 N N N 0 -5.837 -0.778 0.337
26 C23 C C21 N N N 0 -7.626 -2.419 0.3
27 C25 C C22 N N N 0 -5.35 -1.975 -0.394
28 C27 C C23 N Y N 0 -1.611 0.242 -0.664
29 C29 C C24 N N N 0 5.998 -0.93 0.15
30 N30 N N6 N N N 0 6.948 -0.315 0.252
31 H1 H H1 N N N 0 3.928 3.002 1.879
32 H2 H H2 N N N 0 -0.178 4.817 -0.55
33 H3 H H3 N N N 0 -0.97 3.087 -2.3
34 H4 H H4 N N N 0 -0.116 1.529 -2.404
35 H5 H H5 N N N 0 -2.811 3.394 -0.747
36 H6 H H6 N N N 0 -4.408 -1.106 1.842
37 H7 H H7 N N N 0 -5.265 0.451 1.942
38 H8 H H8 N N N 0 -6.78 -1.515 2.081
39 H9 H H9 N N N 0 -7.777 -0.407 1.095
40 H10 H H10 N N N 0 -6.501 -3.715 -1.05
41 H11 H H11 N N N 0 -7.025 -2.167 -1.787
42 H12 H H12 N N N 0 -2.574 -1.417 0.28
43 H13 H H13 N N N 0 6.683 -3.635 -0.18
44 H14 H H14 N N N 0 5.606 -4.911 -0.37
45 H15 H H15 N N N 0 3.053 -4.296 -0.354
46 H16 H H16 N N N 0 1.311 0.017 -1.082
47 H17 H H17 N N N 0 4.605 0.677 1.58
48 H18 H H18 N N N 0 1.866 5.04 1.05
49 H19 H H19 N N N 0 -4.623 2.316 0.525
50 H21 H H21 N N N 0 -7.655 -3.299 0.943
51 H22 H H22 N N N 0 -8.625 -2.186 -0.07
52 H23 H H23 N N N 0 -4.801 -2.638 0.276
53 H24 H H24 N N N 0 -4.728 -1.683 -1.241
54 H25 H H25 N N N 0 -0.765 -0.34 -0.997