Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JGK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 56


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 N Y N 0 2.335 -0.907 -0.07
2 C3 C C2 N Y N 0 3.433 -0.396 -0.748
3 C4 C C3 N Y N 0 4.66 -1.064 -0.686
4 C5 C C4 N Y N 0 4.775 -2.245 0.059
5 C6 C C5 N Y N 0 3.683 -2.748 0.73
6 C7 C C6 N N N 0 5.826 -0.529 -1.402
7 C10 C C7 N N N 0 0.279 -4.206 2.747
8 C11 C C8 N Y N 0 1.03 -0.204 -0.131
9 C12 C C9 N Y N 0 0.962 1.162 0.13
10 C14 C C10 N Y N 0 -1.418 1.11 -0.248
11 C16 C C11 N Y N 0 -0.127 -0.908 -0.455
12 C18 C C12 N Y N 0 -0.061 3.983 1.612
13 C19 C C13 N Y N 0 -0.683 4.286 -0.501
14 C20 C C14 N N N 0 -1.074 4.15 -1.95
15 C15 C C18 N Y N 0 -1.347 -0.251 -0.513
16 C21 C C15 N N N 0 -3.682 -0.633 -0.264
17 C1 C C16 N Y N 0 2.46 -2.092 0.668
18 C13 C C17 N Y N 0 -0.263 1.819 0.072
19 C22 C C20 N Y N 0 -4.878 -1.439 -0.528
20 C17 C C19 N Y N 0 -0.339 3.275 0.35
21 C23 C C21 N Y N 0 -6.193 -3.001 -1.33
22 C24 C C22 N Y N 0 -6.956 -2.225 -0.529
23 C25 C C23 N Y N 0 -6.123 -1.22 -0.013
24 C8 C C24 N N N 0 5.674 0.674 -2.296
25 C9 C C25 N N N 0 1.59 -3.798 2.072
26 N1 N N1 N Y N 0 -0.268 5.248 1.35
27 N2 N N2 N N N 0 0.331 3.426 2.823
28 N3 N N3 N N N 0 -2.508 -0.96 -0.839
29 O1 O O1 N N N 0 6.91 -1.057 -1.274
30 O2 O O2 N N N 0 1.389 -2.593 1.331
31 H1 H H1 N N N 0 3.34 0.514 -1.322
32 O3 O O3 N Y N 0 -0.602 5.422 0.203
33 O4 O O4 N Y N 0 -4.942 -2.523 -1.328
34 O5 O O5 N N N 0 -3.749 0.331 0.476
35 H2 H H2 N N N 0 5.722 -2.761 0.107
36 H3 H H3 N N N 0 3.775 -3.661 1.299
37 H4 H H4 N N N 0 0.432 -5.125 3.312
38 H5 H H5 N N N 0 -0.045 -3.414 3.422
39 H6 H H6 N N N 0 -0.485 -4.37 1.987
40 H7 H H7 N N N 0 1.859 1.71 0.378
41 H8 H H8 N N N 0 -2.37 1.619 -0.293
42 H9 H H9 N N N 0 -0.074 -1.967 -0.662
43 H10 H H10 N N N 0 -2.152 4.013 -2.024
44 H11 H H11 N N N 0 -0.783 5.051 -2.49
45 H12 H H12 N N N 0 -0.567 3.287 -2.383
46 H13 H H13 N N N 0 -6.536 -3.865 -1.88
47 H14 H H14 N N N 0 -8.009 -2.353 -0.326
48 H15 H H15 N N N 0 -6.411 -0.427 0.662
49 H16 H H16 N N N 0 4.658 1.06 -2.216
50 H17 H H17 N N N 0 6.38 1.446 -1.989
51 H18 H H18 N N N 0 5.874 0.388 -3.328
52 H19 H H19 N N N 0 2.354 -3.634 2.832
53 H20 H H20 N N N 0 1.913 -4.59 1.397
54 H21 H H21 N N N 0 0.481 3.996 3.593
55 H22 H H22 N N N 0 0.453 2.467 2.899
56 H23 H H23 N N N 0 -2.468 -1.687 -1.48