Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JHK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C5 C C1 N Y N 0 -6.152 -0.304 0.021
2 C6 C C2 N Y N 0 -4.791 0.099 0.063
3 C7 C C3 N Y N 0 -4.492 1.441 0.319
4 C10 C C4 N Y N 0 -7.139 0.671 0.241
5 C13 C C5 N Y N 0 -0.554 0.882 -0.845
6 C15 C C6 N Y N 0 -0.134 -0.953 0.669
7 C17 C C7 N Y N 0 1.773 0.485 -0.044
8 C21 C C8 N Y N 0 2.747 -0.156 0.666
9 C22 C C9 N N N 0 5.217 0.121 0.985
10 C26 C C10 N N N 0 8.438 -0.631 -0.942
11 C1 C C11 N Y N 0 -4.205 -2.186 -0.403
12 C16 C C15 N Y N 0 0.332 0.131 -0.074
13 C11 C C12 N Y N 0 -2.359 -0.531 -0.129
14 C12 C C13 N Y N 0 -1.892 0.554 -0.872
15 C14 C C14 N Y N 0 -1.471 -1.283 0.642
16 C18 C C16 N Y N 0 2.384 1.548 -0.739
17 C2 C C17 N Y N 0 -3.797 -0.884 -0.158
18 C23 C C18 N N N 0 6.204 -0.089 -0.134
19 C27 C C19 N N N 0 7.903 -0.592 1.538
20 C3 C C20 N Y N 0 -6.453 -1.651 -0.229
21 C9 C C21 N Y N 0 -6.745 1.954 0.482
22 N19 N N1 N Y N 0 3.66 1.535 -0.46
23 N20 N N2 N Y N 0 3.912 0.479 0.424
24 N25 N N3 N N N 0 7.478 -0.428 0.146
25 N4 N N4 N Y N 0 -5.486 -2.518 -0.427
26 N8 N N5 N Y N 0 -5.466 2.3 0.516
27 O24 O O1 N N N 0 5.852 0.047 -1.287
28 H1 H H1 N N N 0 -3.464 1.77 0.356
29 H2 H H2 N N N 0 -8.187 0.41 0.218
30 H3 H H3 N N N 0 -0.192 1.719 -1.423
31 H4 H H4 N N N 0 0.553 -1.535 1.265
32 H5 H H5 N N N 0 2.609 -1.015 1.305
33 H6 H H6 N N N 0 5.124 -0.798 1.564
34 H7 H H7 N N N 0 5.567 0.925 1.632
35 H8 H H8 N N N 0 8.42 -1.676 -1.252
36 H9 H H9 N N N 0 8.169 0.002 -1.788
37 H10 H H10 N N N 0 9.439 -0.371 -0.598
38 H11 H H11 N N N 0 -3.46 -2.948 -0.574
39 H12 H H12 N N N 0 -2.578 1.137 -1.469
40 H13 H H13 N N N 0 -1.832 -2.122 1.217
41 H14 H H14 N N N 0 1.884 2.25 -1.39
42 H18 H H18 N N N 0 -7.482 -1.976 -0.26
43 H15 H H15 N N N 0 8.265 0.362 1.922
44 H16 H H16 N N N 0 7.059 -0.929 2.138
45 H17 H H17 N N N 0 8.703 -1.331 1.588
46 H19 H H19 N N N 0 -7.498 2.71 0.652