Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JN2

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 N N N 0 -0.289 0.213 0.133
2 C4 C C2 N Y N 0 0.95 1.809 -1.324
3 C3 C C3 N Y N 0 0.975 0.752 -0.412
4 C9 C C4 N Y N 0 4.683 0.142 -0.119
5 C8 C C5 N Y N 0 2.196 0.206 -0.018
6 C13 C C6 N Y N 0 7.08 0.113 -0.252
7 C14 C C7 N Y N 0 5.871 0.655 -0.637
8 C7 C C8 N Y N 0 3.38 0.718 -0.535
9 C6 C C9 N Y N 0 3.342 1.774 -1.445
10 C10 C C10 N Y N 0 4.722 -0.916 0.786
11 C12 C C11 N Y N 0 7.114 -0.939 0.648
12 C11 C C12 N Y N 0 5.936 -1.452 1.166
13 C5 C C13 N Y N 0 2.131 2.312 -1.834
14 O2' O O1 N N N 0 -3.233 2.283 1.402
15 C2' C C14 R N N 0 -3.732 1.338 0.454
16 C3' C C15 S N N 0 -5.058 0.76 0.957
17 O3' O O2 N N N 0 -6.03 1.803 1.05
18 C4' C C16 S N N 0 -5.544 -0.308 -0.029
19 O4' O O3 N N N 0 -6.744 -0.905 0.468
20 C5' C C17 R N N 0 -4.463 -1.38 -0.181
21 C6' C C18 N N N 0 -4.916 -2.419 -1.209
22 O6' O O4 N N N 0 -3.961 -3.48 -1.267
23 O5' O O5 N N N 0 -3.248 -0.771 -0.622
24 C1' C C19 R N N 0 -2.721 0.201 0.282
25 N1 N N1 N N N 0 -1.468 0.739 -0.254
26 F15 F F1 N N N 0 8.3 -1.466 1.023
27 O2 O O6 N N N 0 -0.265 -0.707 0.927
28 H1 H H1 N N N 0 0.006 2.23 -1.635
29 H2 H H2 N N N 0 2.221 -0.612 0.688
30 H3 H H3 N N N 0 8.001 0.51 -0.654
31 H4 H H4 N N N 0 5.845 1.476 -1.339
32 H5 H H5 N N N 0 4.262 2.173 -1.847
33 H6 H H6 N N N 0 3.804 -1.316 1.19
34 H7 H H7 N N N 0 5.967 -2.273 1.867
35 H8 H H8 N N N 0 2.106 3.13 -2.539
36 H9 H H9 N N N 0 -2.391 2.687 1.149
37 H10 H H10 N N N 0 -3.89 1.832 -0.505
38 H11 H H11 N N N 0 -4.91 0.309 1.939
39 H12 H H12 N N N 0 -5.787 2.514 1.658
40 H13 H H13 N N N 0 -5.74 0.153 -0.997
41 H14 H H14 N N N 0 -7.471 -0.281 0.594
42 H15 H H15 N N N 0 -4.297 -1.868 0.78
43 H16 H H16 N N N 0 -5.887 -2.819 -0.918
44 H17 H H17 N N N 0 -4.996 -1.949 -2.19
45 H18 H H18 N N N 0 -4.184 -4.176 -1.9
46 H19 H H19 N N N 0 -2.532 -0.266 1.249
47 H20 H H20 N N N 0 -1.487 1.474 -0.887