Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : JSA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 74


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 -4.136 3.078 0.279
2 C5 C C2 N Y N 0 -3.027 3.914 0.066
3 C6 C C3 N Y N 0 -3.228 5.305 0.102
4 N9 N N1 N Y N 0 -3.664 1.793 0.192
5 C2 C C4 N Y N 0 -5.467 4.936 0.525
6 C12 C C5 N N N 0 13.472 2.231 -0.293
7 C11 C C6 N N N 0 12.106 2.227 0.396
8 C10 C C7 N N N 0 11.163 1.279 -0.348
9 C9' C C8 N N N 0 9.796 1.275 0.34
10 C8' C C9 N N N 0 8.853 0.327 -0.403
11 C7' C C10 N N N 0 7.487 0.323 0.285
12 C6' C C11 N N N 0 6.544 -0.625 -0.458
13 C5' C C12 N N N 0 5.177 -0.628 0.23
14 C4' C C13 N N N 0 4.234 -1.577 -0.513
15 C3' C C14 N N N 0 2.868 -1.58 0.175
16 C2' C C15 N N N 0 1.925 -2.528 -0.568
17 C1' C C16 R N N 0 0.559 -2.532 0.12
18 O1 O O1 N N N 0 -0.037 -1.238 0.004
19 N8 N N2 N N N 0 -0.307 -3.527 -0.518
20 S1 S S1 N N N 0 -1.48 -4.293 0.366
21 O2P O O2 N N N 0 -2.159 -5.158 -0.534
22 C3A C C19 S N N 0 -5.324 -1.347 -0.829
23 O1P O O3 N N N 0 -0.852 -4.747 1.557
24 O5' O O4 N N N 0 -2.489 -3.234 0.788
25 C5A C C17 N N N 0 -3.352 -2.801 -0.266
26 C4A C C18 R N N 0 -4.319 -1.743 0.27
27 O4' O O5 N N N 0 -3.593 -0.557 0.632
28 O3' O O6 N N N 0 -6.66 -1.629 -0.41
29 C2A C C20 R N N 0 -5.119 0.177 -1.0
30 O2' O O7 N N N 0 -6.372 0.846 -1.16
31 C1A C C21 R N N 0 -4.452 0.568 0.344
32 C8 C C22 N Y N 0 -2.326 1.866 -0.063
33 N7 N N3 N Y N 0 -1.955 3.111 -0.136
34 N3 N N4 N Y N 0 -5.326 3.628 0.5
35 N1 N N5 N Y N 0 -4.453 5.762 0.335
36 N6 N N6 N N N 0 -2.173 6.178 -0.101
37 H1 H H1 N N N 0 -6.447 5.35 0.707
38 H2 H H2 N N N 0 13.887 1.223 -0.282
39 H3 H H3 N N N 0 13.358 2.566 -1.324
40 H4 H H4 N N N 0 14.144 2.906 0.237
41 H5 H H5 N N N 0 12.219 1.892 1.426
42 H6 H H6 N N N 0 11.691 3.235 0.385
43 H7 H H7 N N N 0 11.049 1.614 -1.379
44 H8 H H8 N N N 0 11.578 0.271 -0.337
45 H9 H H9 N N N 0 9.91 0.94 1.371
46 H10 H H10 N N N 0 9.381 2.283 0.33
47 H11 H H11 N N N 0 8.74 0.662 -1.434
48 H12 H H12 N N N 0 9.268 -0.681 -0.392
49 H13 H H13 N N N 0 7.6 -0.012 1.316
50 H14 H H14 N N N 0 7.072 1.331 0.275
51 H15 H H15 N N N 0 6.43 -0.289 -1.489
52 H16 H H16 N N N 0 6.959 -1.632 -0.447
53 H17 H H17 N N N 0 5.291 -0.964 1.261
54 H18 H H18 N N N 0 4.762 0.379 0.219
55 H19 H H19 N N N 0 4.121 -1.241 -1.544
56 H20 H H20 N N N 0 4.649 -2.584 -0.503
57 H21 H H21 N N N 0 2.982 -1.916 1.206
58 H22 H H22 N N N 0 2.453 -0.572 0.164
59 H23 H H23 N N N 0 1.811 -2.193 -1.599
60 H24 H H24 N N N 0 2.34 -3.536 -0.558
61 H25 H H25 N N N 0 0.683 -2.781 1.174
62 H26 H H26 N N N 0 -0.178 -0.951 -0.909
63 H30 H H30 N N N 0 -4.85 -2.132 1.138
64 H27 H H27 N N N 0 -0.193 -3.738 -1.458
65 H28 H H28 N N N 0 -2.756 -2.374 -1.072
66 H29 H H29 N N N 0 -3.918 -3.652 -0.644
67 H31 H H31 N N N 0 -5.097 -1.869 -1.759
68 H32 H H32 N N N 0 -7.338 -1.346 -1.039
69 H33 H H33 N N N 0 -4.457 0.39 -1.839
70 H34 H H34 N N N 0 -6.869 0.567 -1.941
71 H35 H H35 N N N 0 -5.203 0.69 1.124
72 H36 H H36 N N N 0 -1.672 1.016 -0.186
73 H37 H H37 N N N 0 -1.283 5.832 -0.269
74 H38 H H38 N N N 0 -2.324 7.135 -0.073