Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JSJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 69


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1' C C1 R N N 0 4.98 0.186 0.613
2 C10 C C2 N N N 0 -5.159 -3.396 0.488
3 C11 C C3 N N N 0 -4.679 -2.149 -0.219
4 C12 C C4 N N N 0 -5.697 -1.356 -0.444
5 C13 C C5 N N N 0 -5.621 -0.016 -1.128
6 C14 C C6 N N N 0 -6.959 -1.994 0.09
7 C15 C C7 N N N 0 -7.798 -0.959 0.842
8 C16 C C8 N N N 0 -7.771 -2.601 -1.056
9 C17 C C9 N N N 0 -5.259 -4.56 -0.5
10 C18 C C10 N N N 0 -4.211 -3.754 1.634
11 C2 C C11 N Y N 0 7.523 -3.446 1.313
12 C2' C C12 R N N 0 6.031 1.286 0.345
13 C3' C C13 S N N 0 5.216 2.599 0.376
14 C4 C C14 N Y N 0 6.091 -2.047 0.184
15 C4' C C15 R N N 0 3.77 2.136 0.659
16 C5 C C16 N Y N 0 6.069 -2.954 -0.89
17 C5' C C17 N N N 0 2.774 2.994 -0.125
18 C6 C C18 N Y N 0 6.822 -4.135 -0.775
19 C8 C C19 N Y N 0 4.79 -1.288 -1.426
20 N1 N N1 N Y N 0 7.53 -4.331 0.333
21 N10 N N2 N N N 0 -6.501 -3.056 1.017
22 N3 N N3 N Y N 0 6.825 -2.332 1.255
23 N6 N N4 N N N 0 6.84 -5.066 -1.8
24 N7 N N5 N Y N 0 5.257 -2.43 -1.839
25 N9 N N6 N Y N 0 5.275 -1.007 -0.184
26 O1A O O1 N N N 0 0.192 3.234 -1.869
27 O1B O O2 N N N 0 -3.346 3.974 -0.412
28 O2' O O3 N N N 0 7.025 1.289 1.372
29 O2A O O4 N N N 0 0.094 4.877 0.043
30 O2B O O5 N N N 0 -2.736 1.911 -1.732
31 O3' O O6 N N N 0 5.685 3.454 1.42
32 O3A O O7 N N N 0 -1.186 2.583 0.143
33 O4' O O8 N N N 0 3.724 0.767 0.201
34 O5' O O9 N N N 0 1.441 2.628 0.238
35 O6 O O10 N N N 0 -7.393 -4.214 0.968
36 PA P P1 N N N 0 0.136 3.328 -0.394
37 PB P P2 N N N 0 -2.708 2.497 -0.373
38 S1 S S1 N N N 0 -3.833 1.276 0.946
39 S2 S S2 N N N 0 -5.707 1.303 0.114
40 H1 H H1 N N N 0 4.952 -0.063 1.674
41 H2 H H2 N N N 0 -3.656 -1.944 -0.495
42 H3 H H3 N N N 0 -4.681 0.06 -1.675
43 H4 H H4 N N N 0 -6.455 0.084 -1.823
44 H5 H H5 N N N 0 -8.067 -0.148 0.166
45 H6 H H6 N N N 0 -8.704 -1.432 1.221
46 H7 H H7 N N N 0 -7.221 -0.56 1.676
47 H8 H H8 N N N 0 -7.134 -3.264 -1.641
48 H9 H H9 N N N 0 -8.607 -3.169 -0.647
49 H10 H H10 N N N 0 -8.151 -1.804 -1.695
50 H11 H H11 N N N 0 -4.281 -4.741 -0.948
51 H12 H H12 N N N 0 -5.589 -5.456 0.025
52 H13 H H13 N N N 0 -5.976 -4.312 -1.283
53 H14 H H14 N N N 0 -3.223 -3.979 1.231
54 H15 H H15 N N N 0 -4.14 -2.913 2.323
55 H16 H H16 N N N 0 -4.594 -4.626 2.164
56 H17 H H17 N N N 0 8.109 -3.647 2.198
57 H18 H H18 N N N 0 6.491 1.144 -0.632
58 H19 H H19 N N N 0 5.274 3.106 -0.587
59 H20 H H20 N N N 0 3.556 2.189 1.726
60 H21 H H21 N N N 0 2.938 4.046 0.108
61 H22 H H22 N N N 0 2.917 2.831 -1.193
62 H23 H H23 N N N 0 4.117 -0.655 -1.986
63 H24 H H24 N N N 0 6.328 -4.906 -2.608
64 H25 H H25 N N N 0 7.363 -5.877 -1.709
65 H26 H H26 N N N 0 -3.361 4.419 0.446
66 H27 H H27 N N N 0 7.71 1.961 1.254
67 H28 H H28 N N N 0 0.057 5.015 1.0
68 H29 H H29 N N N 0 6.608 3.726 1.322
69 H30 H H30 N N N 0 -7.082 -4.972 1.482