Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : JV0

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 59


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C8 C C8 N N N 0 -2.112 2.411 1.162
2 C7 C C7 N Y N 0 -1.496 1.037 1.086
3 N1 N N1 N Y N 0 -0.197 0.761 0.765
4 C6 C C6 N Y N 0 0.788 1.707 0.453
5 C24 C C24 N Y N 0 1.859 1.907 1.313
6 C25 C C25 N Y N 0 2.828 2.841 1.003
7 C3 C C3 N Y N 0 2.733 3.576 -0.165
8 C2 C C2 N N N 0 3.792 4.594 -0.501
9 C1 C C1 N N N 0 4.902 3.925 -1.314
10 C4 C C4 N Y N 0 1.667 3.379 -1.024
11 C5 C C5 N Y N 0 0.698 2.443 -0.721
12 C9 C C9 N Y N 0 -2.134 -0.128 1.328
13 C10 C C10 N N N 0 -3.581 -0.284 1.72
14 N2 N N2 N N N 0 -4.427 -0.179 0.523
15 C11 C C11 N N N 0 -5.81 -0.558 0.823
16 C12 C C12 N N N 0 -6.742 -0.033 -0.274
17 S1 S S1 N N N 0 -6.273 -0.808 -1.851
18 C13 C C13 N N N 0 -4.484 -0.485 -1.91
19 C14 C C14 N N N 0 -3.862 -0.947 -0.588
20 C15 C C15 N Y N 0 -1.208 -1.169 1.148
21 C16 C C16 N Y N 0 -0.019 -0.601 0.802
22 C17 C C17 N Y N 0 1.241 -1.321 0.519
23 C18 C C18 N Y N 0 1.418 -2.627 0.98
24 C19 C C19 N Y N 0 2.593 -3.296 0.715
25 C23 C C23 N Y N 0 2.253 -0.699 -0.215
26 C22 C C22 N Y N 0 3.425 -1.373 -0.478
27 C20 C C20 N Y N 0 3.602 -2.672 -0.011
28 S2 S S2 N N N 0 5.104 -3.53 -0.347
29 C21 C C21 N N N 0 6.063 -2.318 -1.296
30 H81C H H81C N N N 0 -2.517 2.682 0.188
31 H82C H H82C N N N 0 -2.912 2.409 1.902
32 H83C H H83C N N N 0 -1.35 3.134 1.453
33 H24 H H24 N N N 0 1.934 1.333 2.225
34 H5 H H5 N N N 0 -0.132 2.286 -1.395
35 H25 H H25 N N N 0 3.661 2.997 1.672
36 H21C H H21C N N N 0 3.348 5.4 -1.085
37 H22C H H22C N N N 0 4.211 5.0 0.42
38 H4 H H4 N N N 0 1.596 3.954 -1.935
39 H11C H H11C N N N 0 5.345 3.119 -0.73
40 H12C H H12C N N N 0 4.483 3.519 -2.235
41 H13C H H13C N N N 0 5.668 4.661 -1.558
42 H101 H H101 N N N 0 -3.728 -1.259 2.184
43 H102 H H102 N N N 0 -3.852 0.5 2.427
44 H15 H H15 N N N 0 -1.401 -2.225 1.266
45 H111 H H111 N N N 0 -5.885 -1.644 0.873
46 H112 H H112 N N N 0 -6.102 -0.131 1.782
47 H141 H H141 N N N 0 -2.783 -0.795 -0.623
48 H142 H H142 N N N 0 -4.072 -2.007 -0.44
49 H121 H H121 N N N 0 -7.773 -0.291 -0.032
50 H122 H H122 N N N 0 -6.642 1.049 -0.353
51 H131 H H131 N N N 0 -4.039 -1.038 -2.737
52 H132 H H132 N N N 0 -4.309 0.583 -2.043
53 H18 H H18 N N N 0 0.636 -3.112 1.545
54 H23 H H23 N N N 0 2.116 0.309 -0.578
55 H19 H H19 N N N 0 2.731 -4.306 1.072
56 H22 H H22 N N N 0 4.208 -0.893 -1.046
57 H211 H H211 N N N 0 5.519 -2.054 -2.203
58 H212 H H212 N N N 0 6.218 -1.424 -0.692
59 H213 H H213 N N N 0 7.029 -2.747 -1.564