Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JVJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 61


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 6.41 2.616 -0.499
2 C2 C C1 N N N 0 5.651 3.414 0.474
3 C3 C C2 N Y N 0 4.185 3.084 0.359
4 C33 C C3 N Y N 0 3.646 2.063 1.122
5 C32 C C4 N Y N 0 2.305 1.757 1.021
6 C6 C C5 N Y N 0 1.491 2.478 0.147
7 C5 C C6 N Y N 0 2.04 3.506 -0.619
8 C4 C C7 N Y N 0 3.382 3.806 -0.506
9 C7 C C8 N Y N 0 0.05 2.153 0.034
10 C20 C C9 N Y N 0 -0.365 0.815 -0.065
11 C21 C C10 N Y N 0 0.636 -0.276 -0.056
12 C31 C C11 N Y N 0 0.425 -1.409 0.731
13 C30 C C12 N Y N 0 1.356 -2.424 0.739
14 C24 C C13 N Y N 0 2.509 -2.319 -0.038
15 C25 C C14 N Y N 0 3.511 -3.413 -0.029
16 C29 C C15 N Y N 0 3.45 -4.575 0.672
17 O28 O O1 N Y N 0 4.552 -5.29 0.404
18 C27 C C16 N Y N 0 5.346 -4.637 -0.458
19 C26 C C17 N Y N 0 4.77 -3.467 -0.781
20 C23 C C18 N Y N 0 2.72 -1.187 -0.825
21 C22 C C19 N Y N 0 1.787 -0.174 -0.838
22 N19 N N2 N Y N 0 -1.66 0.533 -0.166
23 C10 C C20 N Y N 0 -2.552 1.512 -0.174
24 C9 C C21 N Y N 0 -2.137 2.838 -0.076
25 N8 N N3 N Y N 0 -0.854 3.127 0.03
26 O11 O O2 N N N 0 -3.873 1.223 -0.277
27 C12 C C22 N N N 0 -4.229 -0.158 -0.374
28 C13 C C23 N N N 0 -5.75 -0.286 -0.482
29 C18 C C24 N N N 0 -6.126 -1.753 -0.707
30 C17 C C25 N N N 0 -7.65 -1.883 -0.754
31 N16 N N4 N N N 0 -8.222 -1.401 0.51
32 C15 C C26 N N N 0 -7.915 0.018 0.725
33 C14 C C27 N N N 0 -6.398 0.207 0.815
34 H1 H H1 N N N 0 6.064 2.763 -1.435
35 H2 H H2 N N N 0 7.397 2.82 -0.441
36 H4 H H4 N N N 0 5.997 3.184 1.482
37 H5 H H5 N N N 0 5.801 4.474 0.271
38 H6 H H6 N N N 0 4.277 1.505 1.798
39 H7 H H7 N N N 0 1.885 0.959 1.616
40 H8 H H8 N N N 0 1.415 4.068 -1.297
41 H9 H H9 N N N 0 3.808 4.603 -1.098
42 H10 H H10 N N N 0 -0.467 -1.49 1.334
43 H11 H H11 N N N 0 1.193 -3.301 1.348
44 H12 H H12 N N N 0 2.651 -4.872 1.334
45 H13 H H13 N N N 0 6.292 -4.995 -0.834
46 H14 H H14 N N N 0 5.157 -2.716 -1.455
47 H15 H H15 N N N 0 3.613 -1.106 -1.426
48 H16 H H16 N N N 0 1.95 0.702 -1.447
49 H17 H H17 N N N 0 -2.868 3.632 -0.083
50 H18 H H18 N N N 0 -3.764 -0.592 -1.259
51 H19 H H19 N N N 0 -3.883 -0.686 0.515
52 H20 H H20 N N N 0 -6.108 0.315 -1.318
53 H21 H H21 N N N 0 -5.702 -2.096 -1.651
54 H22 H H22 N N N 0 -5.733 -2.359 0.109
55 H23 H H23 N N N 0 -8.04 -1.288 -1.579
56 H24 H H24 N N N 0 -7.921 -2.928 -0.9
57 H25 H H25 N N N 0 -7.905 -1.962 1.287
58 H27 H H27 N N N 0 -8.304 0.605 -0.107
59 H28 H H28 N N N 0 -8.378 0.354 1.653
60 H29 H H29 N N N 0 -6.01 -0.368 1.656
61 H30 H H30 N N N 0 -6.171 1.263 0.959