Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : JY8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 24


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 0.004 -0.582 0.184
2 C5 C C2 N Y N 0 -0.775 0.572 -0.002
3 C2 C C3 N Y N 0 -1.907 -1.857 0.14
4 N1 N N1 N Y N 0 -2.68 -0.802 -0.041
5 C6 C C4 N Y N 0 -2.167 0.422 -0.116
6 C8 C C5 N Y N 0 1.296 1.205 0.126
7 C81 C C6 N N N 0 2.519 2.084 0.148
8 C91 C C7 N N N 0 2.488 -0.997 0.442
9 C92 C C8 N N N 0 3.025 -1.429 -0.924
10 N3 N N2 N Y N 0 -0.598 -1.765 0.246
11 N6 N N3 N N N 0 -2.986 1.522 -0.3
12 N7 N N4 N Y N 0 0.075 1.628 -0.029
13 N9 N N5 N Y N 0 1.305 -0.152 0.257
14 H1 H H1 N N N 0 -2.365 -2.834 0.194
15 H2 H H2 N N N 0 2.903 2.199 -0.865
16 H3 H H3 N N N 0 2.256 3.063 0.55
17 H4 H H4 N N N 0 3.284 1.627 0.777
18 H5 H H5 N N N 0 2.217 -1.879 1.022
19 H6 H H6 N N N 0 3.256 -0.435 0.973
20 H7 H H7 N N N 0 2.257 -1.992 -1.454
21 H8 H H8 N N N 0 3.296 -0.547 -1.504
22 H9 H H9 N N N 0 3.905 -2.058 -0.785
23 H10 H H10 N N N 0 -3.946 1.405 -0.377
24 H11 H H11 N N N 0 -2.6 2.41 -0.353