Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : K06

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 62


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 7.857 0.896 -0.101
2 C2 C C2 N N N 0 6.696 -0.071 0.139
3 C4 C C3 N N N 0 5.642 0.464 1.123
4 C5 C C4 N N N 0 4.939 1.092 -0.092
5 C7 C C5 N N N 0 5.605 -0.003 -0.943
6 C8 C C6 N Y N 0 3.437 0.987 -0.041
7 C11 C C7 N Y N 0 0.676 0.794 0.054
8 C12 C C8 N Y N 0 1.281 1.869 -0.598
9 C16 C C9 N Y N 0 -2.851 1.752 0.251
10 C18 C C10 N N N 0 -4.846 2.914 -0.304
11 C19 C C11 N N N 0 -5.603 1.655 0.037
12 O20 O O1 N N N 0 -6.813 1.673 0.112
13 C23 C C12 N N N 0 -5.947 -1.472 -0.749
14 C24 C C13 N N N 0 -6.695 -2.77 -0.438
15 C27 C C14 N Y N 0 -1.41 -0.571 0.051
16 C30 C C15 N Y N 0 1.169 -3.039 -1.125
17 C31 C C16 N Y N 0 0.946 -4.095 -0.26
18 C32 C C17 N Y N 0 -0.041 -4.009 0.706
19 C33 C C18 N Y N 0 -0.809 -2.867 0.812
20 O3 O O2 N N N 0 7.131 -1.4 0.43
21 N6 N N1 N N N 0 5.406 2.449 -0.406
22 C9 C C19 N Y N 0 2.842 -0.079 0.612
23 C10 C C20 N Y N 0 1.467 -0.18 0.662
24 C13 C C21 N Y N 0 2.658 1.959 -0.641
25 C14 C C22 N Y N 0 -0.801 0.692 0.105
26 N15 N N2 N Y N 0 -1.532 1.795 0.202
27 O17 O O3 N N N 0 -3.572 2.9 0.344
28 N21 N N3 N N N 0 -4.925 0.509 0.258
29 C25 C C24 N Y N 0 -3.526 0.527 0.203
30 C22 C C23 N N N 0 -5.641 -0.734 0.556
31 C26 C C25 N Y N 0 -2.805 -0.651 0.102
32 C28 C C26 N Y N 0 -0.589 -1.799 -0.057
33 C29 C C27 N Y N 0 0.411 -1.89 -1.025
34 H1 H H1 N N N 0 7.481 1.919 -0.119
35 H2 H H2 N N N 0 8.588 0.792 0.701
36 H3 H H3 N N N 0 8.331 0.666 -1.055
37 H4 H H4 N N N 0 5.06 -0.319 1.608
38 H5 H H5 N N N 0 6.035 1.198 1.827
39 H6 H H6 N N N 0 5.967 0.354 -1.907
40 H7 H H7 N N N 0 5.012 -0.914 -1.023
41 H8 H H8 N N N 0 0.674 2.628 -1.067
42 H9 H H9 N N N 0 -4.707 2.972 -1.383
43 H10 H H10 N N N 0 -5.412 3.781 0.036
44 H11 H H11 N N N 0 -5.014 -1.704 -1.262
45 H12 H H12 N N N 0 -6.565 -0.84 -1.388
46 H13 H H13 N N N 0 -6.077 -3.401 0.2
47 H14 H H14 N N N 0 -7.628 -2.537 0.075
48 H15 H H15 N N N 0 -6.913 -3.295 -1.368
49 H16 H H16 N N N 0 1.94 -3.112 -1.877
50 H17 H H17 N N N 0 1.544 -4.991 -0.34
51 H18 H H18 N N N 0 -0.211 -4.837 1.378
52 H19 H H19 N N N 0 -1.579 -2.801 1.566
53 H20 H H20 N N N 0 7.801 -1.451 1.126
54 H21 H H21 N N N 0 4.92 2.822 -1.207
55 H22 H H22 N N N 0 5.308 3.058 0.392
56 H24 H H24 N N N 0 3.456 -0.832 1.083
57 H25 H H25 N N N 0 1.004 -1.012 1.172
58 H26 H H26 N N N 0 3.127 2.791 -1.146
59 H27 H H27 N N N 0 -6.575 -0.502 1.069
60 H28 H H28 N N N 0 -5.023 -1.366 1.194
61 H29 H H29 N N N 0 -3.307 -1.606 0.063
62 H30 H H30 N N N 0 0.589 -1.064 -1.698