Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : K3K

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 67


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 N Y N 0 7.644 2.363 1.092
2 C4 C C2 N Y N 0 5.807 1.239 0.287
3 N1 N N1 N Y N 0 7.588 3.269 0.132
4 C8 C C3 N Y N 0 4.096 0.738 -1.021
5 C6 C C4 N Y N 0 6.648 3.22 -0.806
6 N3 N N2 N Y N 0 6.786 1.369 1.177
7 C5 C C5 N Y N 0 5.706 2.175 -0.758
8 N6 N N3 N N N 0 6.597 4.174 -1.806
9 N7 N N4 N Y N 0 4.647 1.821 -1.518
10 C1' C C6 R N N 0 4.485 -0.82 0.939
11 C1B C C7 N Y N 0 -7.533 2.946 0.678
12 C1P C C8 R N N 0 -4.198 -0.566 -0.056
13 C2' C C9 R N N 0 3.247 -0.548 1.832
14 C2P C C10 R N N 0 -4.883 -1.765 -0.748
15 C3' C C11 S N N 0 2.731 -1.98 2.115
16 C3B C C12 N Y N 0 -7.566 1.276 2.271
17 C3P C C13 S N N 0 -3.709 -2.583 -1.33
18 C4' C C14 R N N 0 3.337 -2.831 0.982
19 C4P C C15 R N N 0 -2.453 -1.782 -0.921
20 C5' C C16 N N N 0 2.221 -3.513 0.19
21 C5B C C17 N Y N 0 -6.011 1.078 0.59
22 C5P C C18 N N N 0 -1.407 -1.824 -2.036
23 C6B C C19 N Y N 0 -6.478 2.28 0.032
24 C81 C C20 N N N 0 2.951 0.071 -1.563
25 C82 C C21 N N N 0 2.012 -0.476 -2.008
26 C83 C C22 N N N 0 0.835 -1.162 -2.565
27 C8B C C23 N Y N 0 -4.869 1.563 -1.232
28 N1B N N5 N N N 0 -8.038 4.131 0.172
29 N2B N N6 N Y N 0 -8.038 2.409 1.784
30 N4B N N7 N Y N 0 -6.579 0.618 1.7
31 N7B N N8 N Y N 0 -5.738 2.519 -1.078
32 N9 N N9 N Y N 0 4.783 0.345 0.102
33 N9B N N10 N Y N 0 -4.997 0.65 -0.228
34 O2' O O1 N N N 0 3.628 0.106 3.044
35 O2P O O2 N N N 0 -5.613 -2.543 0.203
36 O3' O O3 N N N 0 3.196 -2.437 3.387
37 O3P O O4 N N N 0 -3.677 -3.892 -0.757
38 O4' O O5 N N N 0 4.074 -1.941 0.127
39 O4P O O6 N N N 0 -2.925 -0.431 -0.725
40 O5' O O7 N N N 0 2.794 -4.39 -0.783
41 O5P O O8 N N N 0 -0.212 -1.178 -1.593
42 H1 H H1 N N N 0 8.427 2.438 1.832
43 H2 H H2 N N N 0 7.251 4.889 -1.829
44 H3 H H3 N N N 0 5.906 4.128 -2.486
45 H4 H H4 N N N 0 5.348 -1.083 1.549
46 H5 H H5 N N N 0 -4.05 -0.774 1.004
47 H6 H H6 N N N 0 2.5 0.036 1.294
48 H9 H H9 N N N 0 -8.005 0.875 3.172
49 H7 H H7 N N N 0 -5.543 -1.42 -1.544
50 H8 H H8 N N N 0 1.642 -2.008 2.075
51 H10 H H10 N N N 0 -3.786 -2.643 -2.416
52 H11 H H11 N N N 0 4.007 -3.582 1.401
53 H12 H H12 N N N 0 -2.036 -2.178 0.005
54 H13 H H13 N N N 0 1.591 -4.087 0.87
55 H14 H H14 N N N 0 1.618 -2.757 -0.313
56 H15 H H15 N N N 0 -1.187 -2.861 -2.289
57 H16 H H16 N N N 0 -1.793 -1.31 -2.916
58 H17 H H17 N N N 0 0.495 -0.634 -3.457
59 H18 H H18 N N N 0 1.102 -2.185 -2.829
60 H19 H H19 N N N 0 -4.152 1.502 -2.038
61 H20 H H20 N N N 0 -7.663 4.511 -0.638
62 H21 H H21 N N N 0 -8.766 4.582 0.627
63 H22 H H22 N N N 0 2.888 0.297 3.637
64 H23 H H23 N N N 0 -6.013 -3.342 -0.167
65 H24 H H24 N N N 0 2.902 -3.329 3.616
66 H25 H H25 N N N 0 -4.47 -4.418 -0.932
67 H26 H H26 N N N 0 2.142 -4.857 -1.323