Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : K9L

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N01 N N01 N Y N 0 6.351 -2.63 -0.339
2 C02 C C02 N Y N 0 5.365 -1.849 0.006
3 N03 N N03 N Y N 0 5.696 -0.568 -0.31
4 C04 C C04 N Y N 0 6.948 -0.604 -0.872
5 C05 C C05 N Y N 0 7.334 -1.893 -0.879
6 C1' C C1' N Y N 0 -5.173 -0.697 -0.497
7 N11 N N11 N Y N 0 3.719 0.434 0.455
8 C12 C C12 N Y N 0 4.912 0.567 -0.102
9 N13 N N13 N Y N 0 5.379 1.75 -0.467
10 C14 C C14 N Y N 0 4.662 2.846 -0.285
11 C15 C C15 N Y N 0 3.408 2.744 0.296
12 C16 C C16 N Y N 0 2.95 1.489 0.666
13 C17 C C17 N N N 0 1.592 1.329 1.301
14 C18 C C18 N N N 0 0.77 0.319 0.497
15 N19 N N19 N N N 0 -0.553 0.163 1.116
16 C2' C C2' N Y N 0 -5.677 0.557 -0.781
17 C21 C C21 S N N 0 -1.373 -0.801 0.37
18 C22 C C22 N N N 0 -2.173 -1.824 1.179
19 C23 C C23 S N N 0 -2.893 -0.669 0.478
20 C24 C C24 N N N 0 -3.722 -1.004 -0.764
21 C3' C C3' N Y N 0 -7.011 0.839 -0.536
22 C4' C C4' N Y N 0 -7.837 -0.138 -0.006
23 C5' C C5' N Y N 0 -7.33 -1.392 0.278
24 C6' C C6' N Y N 0 -5.998 -1.67 0.038
25 F7' F F7' N N N 0 -7.505 2.065 -0.814
26 H02 H H02 N N N 0 4.44 -2.166 0.465
27 H04 H H04 N N N 0 7.514 0.24 -1.237
28 H05 H H05 N N N 0 8.274 -2.27 -1.255
29 H14 H H14 N N N 0 5.049 3.809 -0.585
30 H15 H H15 N N N 0 2.801 3.623 0.457
31 H17 H H17 N N N 0 1.709 0.97 2.323
32 H17A H H17A N N N 0 1.08 2.291 1.309
33 H18 H H18 N N N 0 0.653 0.678 -0.525
34 H18A H H18A N N N 0 1.283 -0.642 0.489
35 HN19 H HN19 N N N 0 -0.47 -0.106 2.085
36 H2' H H2' N N N 0 -5.032 1.318 -1.195
37 H21 H H21 N N N 0 -0.962 -1.126 -0.586
38 H22 H H22 N N N 0 -2.29 -2.821 0.755
39 H22A H H22A N N N 0 -2.092 -1.781 2.265
40 H23 H H23 N N N 0 -3.285 0.133 1.104
41 H24 H H24 N N N 0 -3.612 -2.062 -1.0
42 H24A H H24A N N N 0 -3.373 -0.405 -1.605
43 H4' H H4' N N N 0 -8.877 0.081 0.186
44 H5' H H5' N N N 0 -7.975 -2.153 0.692
45 H6' H H6' N N N 0 -5.602 -2.65 0.26