Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KAA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 NZ N NZ N N N 0 -2.763 5.667 7.546
2 CE C CE N N N 0 -2.073 5.375 6.295
3 CD C CD N N N 0 -2.331 6.483 5.276
4 CG C CG N N N 0 -1.607 6.2 3.957
5 CB C CB N N N 0 -1.894 7.292 2.919
6 CA C CA S N N 0 -1.158 7.045 1.596
7 N N N N N N 0 -1.479 8.09 0.623
8 C C C N N N 0 -1.585 5.728 0.969
9 O O O N N N 0 -2.688 5.224 1.155
10 N8 N N8 N N N 0 -0.585 5.136 0.13
11 S1 S S1 N N N 0 -0.781 3.654 -0.709
12 O1S O O1S N N N 0 0.127 3.669 -1.841
13 O2S O O2S N N N 0 -2.201 3.432 -0.913
14 O5' O O5* N N N 0 -0.238 2.541 0.36
15 C5' C C5* N N N 0 -0.881 2.428 1.621
16 C4' C C4* R N N 0 -0.199 1.333 2.429
17 O4' O O4* N N N 0 1.179 1.716 2.644
18 C3' C C3* S N N 0 -0.816 1.144 3.811
19 O3' O O3* N N N 0 -0.579 -0.197 4.241
20 C2' C C2* R N N 0 -0.001 2.098 4.662
21 O2' O O2* N N N 0 -0.013 1.764 6.035
22 C1' C C1* R N N 0 1.384 1.94 4.052
23 N9 N N9 N Y N 0 2.255 3.097 4.246
24 C8 C C8 N Y N 0 2.314 4.207 3.444
25 N7 N N7 N Y N 0 3.197 5.084 3.873
26 C5 C C5 N Y N 0 3.736 4.519 5.001
27 C4 C C4 N Y N 0 3.163 3.282 5.251
28 N3 N N3 N Y N 0 3.443 2.448 6.263
29 C2 C C2 N Y N 0 4.398 2.975 7.06
30 N1 N N1 N Y N 0 5.043 4.161 6.942
31 C6 C C6 N Y N 0 4.71 4.953 5.894
32 N6 N N6 N N N 0 5.344 6.195 5.717
33 HNZ1 H 1HNZ N N N 0 -2.477 5.178 8.367
34 HNZ2 H 2HNZ N N N 0 -3.616 6.183 7.504
35 HE1 H 1HE N N N 0 -2.429 4.415 5.907
36 HE2 H 2HE N N N 0 -0.998 5.28 6.487
37 HD1 H 1HD N N N 0 -1.992 7.446 5.678
38 HD2 H 2HD N N N 0 -3.409 6.572 5.089
39 HG1 H 1HG N N N 0 -0.529 6.136 4.144
40 HG2 H 2HG N N N 0 -1.927 5.228 3.564
41 HB1 H 1HB N N N 0 -2.975 7.325 2.732
42 HB2 H 2HB N N N 0 -1.613 8.267 3.337
43 HA H HA N N N 0 -0.074 7.054 1.759
44 HN1 H 1HN N N N 0 -2.437 8.33 0.497
45 HN2 H 2HN N N N 0 -0.766 8.37 -0.012
46 HN8 H HN8 N N N 0 0.308 5.633 0.024
47 H5'1 H 1H5* N N N 0 -0.81 3.389 2.14
48 H5'2 H 2H5* N N N 0 -1.935 2.186 1.458
49 H4' H H4* N N N 0 -0.198 0.404 1.85
50 H3' H H3* N N N 0 -1.893 1.322 3.856
51 HO3' H HO3* N N N 0 -0.576 -0.744 3.441
52 H2' H H2* N N N 0 -0.369 3.124 4.543
53 HO2' H HO2* N N N 0 0.47 2.465 6.507
54 H1' H H1* N N N 0 1.934 1.09 4.471
55 H8 H H8 N N N 0 1.691 4.319 2.567
56 H2 H H2 N N N 0 4.69 2.366 7.909
57 HN61 H 1HN6 N N N 0 5.438 6.573 4.794
58 HN62 H 2HN6 N N N 0 5.777 6.643 6.502