Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KDJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 60


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N15 N N1 N N N 0 -1.663 0.973 0.279
2 C3 C C1 R N N 0 1.996 0.799 -0.694
3 C4 C C2 S N N 0 0.74 1.33 0.001
4 C5 C C3 N N N 0 -0.461 0.465 -0.386
5 C6 C C4 R N N 0 -0.209 -0.98 0.05
6 C1 C C5 S N N 0 1.046 -1.511 -0.645
7 C2 C C6 N N N 0 2.247 -0.646 -0.258
8 O75 O O1 N N N 0 -5.495 1.405 -2.005
9 PB5 P P1 N N N 0 -5.59 0.776 -0.526
10 O85 O O2 N N N 0 -6.805 1.285 0.149
11 O95 O O3 N N N 0 -5.665 -0.829 -0.629
12 C45 C C7 N N N 0 -4.116 1.255 0.434
13 F55 F F1 N N N 0 -4.05 2.65 0.523
14 F65 F F2 N N N 0 -4.198 0.709 1.719
15 C25 C C8 N N N 0 -2.878 0.738 -0.254
16 O35 O O4 N N N 0 -2.977 0.109 -1.286
17 O14 O O5 N N N 0 0.506 2.68 -0.406
18 PA4 P P2 N N N 0 0.467 3.913 0.628
19 O34 O O6 N N N 0 1.923 4.105 1.288
20 O44 O O7 N N N 0 0.052 5.257 -0.155
21 O24 O O8 N N N 0 -0.524 3.635 1.691
22 O13 O O9 N N N 0 3.118 1.608 -0.333
23 PA3 P P3 N N N 0 3.997 2.419 -1.41
24 O33 O O10 N N N 0 4.49 1.486 -2.448
25 O43 O O11 N N N 0 3.087 3.555 -2.099
26 O23 O O12 N N N 0 5.249 3.11 -0.67
27 O12 O O13 N N N 0 2.431 -0.691 1.158
28 PA2 P P4 N N N 0 3.781 -1.231 1.85
29 O32 O O14 N N N 0 4.942 -0.484 1.318
30 O42 O O15 N N N 0 3.69 -1.017 3.443
31 O22 O O16 N N N 0 3.958 -2.799 1.529
32 O11 O O17 N N N 0 1.281 -2.861 -0.238
33 PA1 P P5 N N N 0 1.319 -4.094 -1.272
34 O31 O O18 N N N 0 1.475 -5.473 -0.456
35 O41 O O19 N N N 0 0.063 -4.122 -2.053
36 O21 O O20 N N N 0 2.569 -3.918 -2.272
37 O16 O O21 N N N 0 -1.331 -1.788 -0.311
38 PA6 P P6 N N N 0 -2.21 -2.6 0.766
39 O36 O O22 N N N 0 -3.303 -3.5 -0.001
40 O46 O O23 N N N 0 -1.325 -3.475 1.567
41 O26 O O24 N N N 0 -2.96 -1.56 1.74
42 H1 H H1 N N N 0 -1.585 1.476 1.105
43 H2 H H2 N N N 0 1.856 0.834 -1.774
44 H3 H H3 N N N 0 0.881 1.296 1.081
45 H4 H H4 N N N 0 -0.601 0.5 -1.466
46 H5 H H5 N N N 0 -0.069 -1.015 1.13
47 H6 H H6 N N N 0 0.906 -1.476 -1.725
48 H7 H H7 N N N 0 3.142 -1.024 -0.753
49 H8 H H8 N N N 0 -4.72 1.115 -2.507
50 H9 H H9 N N N 0 -6.426 -1.156 -1.128
51 H10 H H10 N N N 0 2.624 4.291 0.649
52 H11 H H11 N N N 0 0.008 6.043 0.407
53 H12 H H12 N N N 0 2.729 4.203 -1.477
54 H13 H H13 N N N 0 5.823 3.617 -1.26
55 H14 H H14 N N N 0 4.47 -1.32 3.926
56 H15 H H15 N N N 0 3.232 -3.351 1.85
57 H16 H H16 N N N 0 1.505 -6.261 -1.017
58 H17 H H17 N N N 0 3.427 -3.891 -1.827
59 H18 H H18 N N N 0 -3.869 -4.017 0.587
60 H19 H H19 N N N 0 -3.558 -0.954 1.282