Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KGN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P1 P P1 N N N 0 -1.67 -2.782 -2.352
2 P2 P P2 N N N 0 -3.922 -0.377 1.273
3 P3 P P3 N N N 0 -2.142 3.16 -0.507
4 P4 P P4 N N N 0 2.085 3.214 0.48
5 P5 P P5 N N N 0 3.949 -0.292 -1.273
6 P6 P P6 N N N 0 1.755 -2.723 2.371
7 C1 C C1 N N N 0 -0.719 -1.593 -0.156
8 C2 C C2 N N N 0 -1.384 -0.35 0.437
9 C3 C C3 N N N 0 -0.749 0.905 -0.165
10 C4 C C4 N N N 0 0.746 0.924 0.156
11 C5 C C5 N N N 0 1.411 -0.319 -0.437
12 C6 C C6 N N N 0 0.776 -1.574 0.166
13 O11 O O1 N N N 0 -0.902 -1.601 -1.573
14 O12 O O2 N N N 0 -2.782 -0.368 0.137
15 O13 O O3 N N N 0 -1.37 2.067 0.389
16 O14 O O4 N N N 0 1.34 2.096 -0.407
17 O15 O O5 N N N 0 2.809 -0.301 -0.137
18 O16 O O6 N N N 0 0.959 -1.566 1.583
19 O21 O O7 N N N 0 -3.019 -2.961 -1.771
20 O22 O O8 N N N 0 -5.368 -0.529 0.581
21 O23 O O9 N N N 0 -1.238 3.655 -1.569
22 O24 O O10 N N N 0 1.019 3.923 1.456
23 O25 O O11 N N N 0 5.398 -0.405 -0.58
24 O26 O O12 N N N 0 1.878 -2.326 3.926
25 O31 O O13 N N N 0 -1.802 -2.4 -3.91
26 O32 O O14 N N N 0 -3.694 -1.514 2.193
27 O33 O O15 N N N 0 -3.44 2.484 -1.178
28 O34 O O16 N N N 0 3.146 2.575 1.289
29 O35 O O17 N N N 0 3.748 -1.441 -2.184
30 O36 O O18 N N N 0 0.955 -4.114 2.233
31 O41 O O19 N N N 0 -0.837 -4.152 -2.204
32 O42 O O20 N N N 0 -3.866 1.003 2.101
33 O43 O O21 N N N 0 -2.6 4.39 0.425
34 O44 O O22 N N N 0 2.742 4.319 -0.49
35 O45 O O23 N N N 0 3.861 1.079 -2.112
36 O46 O O24 N N N 0 3.108 -2.874 1.791
37 H1 H H1 N N N 0 -1.172 -2.487 0.274
38 H2 H H2 N N N 0 -1.245 -0.344 1.518
39 H3 H H3 N N N 0 -0.889 0.899 -1.246
40 H4 H H4 N N N 0 0.886 0.93 1.237
41 H8 H H8 N N N 0 0.293 4.364 0.993
42 H5 H H5 N N N 0 1.272 -0.325 -1.518
43 H6 H H6 N N N 0 1.25 -2.46 -0.257
44 H7 H H7 N N N 0 -6.104 -0.542 1.207
45 H9 H H9 N N N 0 6.135 -0.405 -1.206
46 H10 H H10 N N N 0 2.347 -2.98 4.463
47 H11 H H11 N N N 0 -2.256 -3.069 -4.442
48 H12 H H12 N N N 0 -4.078 2.137 -0.539
49 H13 H H13 N N N 0 0.058 -4.089 2.593
50 H14 H H14 N N N 0 0.06 -4.108 -2.565
51 H15 H H15 N N N 0 -4.009 1.792 1.561
52 H16 H H16 N N N 0 -3.072 5.089 -0.049
53 H17 H H17 N N N 0 3.208 5.025 -0.023
54 H18 H H18 N N N 0 3.984 1.876 -1.577