Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : L1Y

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 S N N 0 -1.304 0.523 0.563
2 C12 C C2 N N N 0 -1.443 1.809 1.402
3 C14 C C3 N N N 0 -3.633 1.343 0.484
4 O17 O O1 N N N 0 -4.983 -0.695 -0.995
5 C01 C C4 N Y N 0 2.857 -0.47 1.051
6 C02 C C5 N Y N 0 3.776 -0.271 0.019
7 C03 C C6 N Y N 0 3.352 0.26 -1.201
8 C04 C C7 N Y N 0 2.026 0.587 -1.387
9 C05 C C8 N Y N 0 1.106 0.388 -0.354
10 C06 C C9 N Y N 0 1.531 -0.149 0.865
11 C07 C C10 N N N 0 -0.312 0.738 -0.552
12 C08 C C11 N N N 0 -3.192 -1.135 0.471
13 C09 C C12 N N N 0 -4.498 -1.468 -0.203
14 C11 C C13 R N N 0 -2.696 0.226 -0.021
15 C13 C C14 N N N 0 -2.68 2.522 0.803
16 C18 C C15 N N N 0 5.199 -0.621 0.218
17 O15 O O2 N N N 0 -5.123 -2.622 0.077
18 O16 O O3 N N N 0 -0.681 1.198 -1.61
19 O19 O O4 N N N 0 6.086 -0.429 -0.778
20 O20 O O5 N N N 0 5.569 -1.082 1.279
21 H1 H H1 N N N 0 -0.981 -0.303 1.196
22 H2 H H2 N N N 0 -1.614 1.565 2.45
23 H3 H H3 N N N 0 -0.555 2.432 1.295
24 H4 H H4 N N N 0 -4.343 1.626 -0.293
25 H5 H H5 N N N 0 -4.16 1.022 1.383
26 H6 H H6 N N N 0 3.186 -0.88 1.995
27 H7 H H7 N N N 0 4.063 0.414 -1.999
28 H8 H H8 N N N 0 1.699 0.998 -2.33
29 H9 H H9 N N N 0 0.82 -0.303 1.664
30 H10 H H10 N N N 0 -3.338 -1.1 1.55
31 H11 H H11 N N N 0 -2.453 -1.9 0.229
32 H12 H H12 N N N 0 -2.655 0.237 -1.11
33 H13 H H13 N N N 0 -3.13 3.195 1.533
34 H14 H H14 N N N 0 -2.414 3.06 -0.107
35 H15 H H15 N N N 0 -5.958 -2.792 -0.38
36 H16 H H16 N N N 0 7.004 -0.673 -0.601