Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : L7L

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 56


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C13 C C1 N Y N 0 -5.048 0.468 -0.7
2 C20 C C2 N Y N 0 -4.61 -1.77 0.104
3 C22 C C3 N N N 0 -0.729 1.135 -0.489
4 C02 C C4 N N N 0 4.376 0.339 -0.958
5 C03 C C5 N N N 0 3.616 1.51 -0.331
6 C05 C C6 N N N 0 1.379 1.975 0.516
7 C06 C C7 S N N 0 -0.037 1.554 0.812
8 C07 C C8 N N N 0 -0.798 2.726 1.436
9 C08 C C9 N N N 0 -2.227 2.29 1.768
10 C09 C C10 N N N 0 -2.944 1.879 0.477
11 C11 C C11 N N N 0 -2.693 -0.326 -0.557
12 C12 C C12 N Y N 0 -4.141 -0.546 -0.381
13 C14 C C13 N Y N 0 -6.4 0.259 -0.535
14 C16 C C14 N Y N 0 -6.863 -0.962 -0.057
15 C18 C C15 N Y N 0 -5.964 -1.976 0.257
16 N04 N N1 N N N 0 2.239 1.1 -0.043
17 N10 N N2 N N N 0 -2.142 0.852 -0.203
18 O17 O O1 N N N 0 -8.195 -1.165 0.105
19 O21 O O2 N N N 0 -1.996 -1.207 -1.022
20 O23 O O3 N N N 0 1.745 3.101 0.779
21 S01 S S1 N N N 0 6.08 0.845 -1.316
22 CL15 CL CL1 N N N 0 -7.527 1.521 -0.923
23 CL19 CL CL2 N N N 0 -6.547 -3.496 0.858
24 H131 H H1 N N N 0 -4.689 1.417 -1.07
25 H201 H H2 N N N 0 -3.912 -2.558 0.347
26 H221 H H3 N N N 0 -0.658 1.942 -1.217
27 H222 H H4 N N N 0 -0.251 0.24 -0.887
28 H021 H H5 N N N 0 4.384 -0.502 -0.264
29 H022 H H6 N N N 0 3.884 0.041 -1.884
30 H032 H H7 N N N 0 4.108 1.808 0.594
31 H031 H H8 N N N 0 3.607 2.35 -1.025
32 H061 H H9 N N N 0 -0.029 0.714 1.507
33 H071 H H10 N N N 0 -0.294 3.042 2.349
34 H072 H H11 N N N 0 -0.827 3.557 0.73
35 H081 H H12 N N N 0 -2.199 1.443 2.454
36 H082 H H13 N N N 0 -2.762 3.118 2.233
37 H091 H H14 N N N 0 -3.927 1.474 0.719
38 H092 H H15 N N N 0 -3.053 2.747 -0.172
39 H041 H H16 N N N 0 1.947 0.2 -0.254
40 H171 H H17 N N N 0 -8.636 -1.527 -0.676
41 S1 S S2 N N Y 0 6.909 1.025 0.551
42 C2 C C16 N N Y 0 7.43 -0.671 0.93
43 C3 C C17 N N Y 0 8.614 -1.052 0.039
44 N1 N N3 N N Y 0 9.037 -2.425 0.346
45 C4 C C18 N N Y 0 7.995 -3.392 -0.025
46 C5 C C19 N N Y 0 10.31 -2.744 -0.313
47 H1 H H18 N N Y 0 7.728 -0.734 1.977
48 H2 H H19 N N Y 0 6.602 -1.356 0.746
49 H3 H H20 N N Y 0 8.316 -0.989 -1.007
50 H4 H H21 N N Y 0 9.442 -0.367 0.223
51 H5 H H22 N N Y 0 7.795 -3.318 -1.094
52 H6 H H23 N N Y 0 8.333 -4.4 0.213
53 H7 H H24 N N Y 0 7.083 -3.174 0.531
54 H8 H H25 N N Y 0 11.081 -2.056 0.033
55 H9 H H26 N N Y 0 10.599 -3.766 -0.069
56 H10 H H27 N N Y 0 10.194 -2.647 -1.393