Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : L8N

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 32


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 2.997 0.267 -0.096
2 N1 N N1 N N N 0 4.991 -1.456 0.698
3 O1 O O1 N N N 0 5.244 -0.009 -1.286
4 C2 C C2 N Y N 0 2.34 -0.127 -1.247
5 O2 O O2 N N N 0 5.189 0.984 1.007
6 C3 C C3 N Y N 0 0.973 0.042 -1.355
7 O3 O O3 N N N 0 -1.085 0.775 -0.412
8 C4 C C4 N Y N 0 0.26 0.608 -0.308
9 C5 C C5 N Y N 0 0.922 1.002 0.846
10 C6 C C6 N Y N 0 2.289 0.831 0.949
11 C7 C C7 N Y N 0 -3.71 -0.072 0.059
12 C8 C C8 N Y N 0 -4.113 1.201 -0.299
13 C9 C C9 N Y N 0 -5.46 1.511 -0.347
14 C10 C C10 N Y N 0 -6.402 0.548 -0.038
15 C11 C C11 N Y N 0 -5.999 -0.725 0.319
16 C12 C C12 N Y N 0 -4.652 -1.035 0.368
17 S1 S S1 N N N 0 4.74 0.044 0.042
18 P1 P P1 N N N 0 -1.943 -0.481 0.116
19 O5 O O4 N N N 0 -1.554 -0.794 1.509
20 O4 O O5 N N N 0 -1.658 -1.758 -0.822
21 H1 H H1 N N N 0 5.793 -1.954 0.475
22 H2 H H2 N N N 0 4.337 -1.836 1.305
23 H3 H H3 N N N 0 2.895 -0.567 -2.062
24 H4 H H4 N N N 0 0.46 -0.265 -2.255
25 H5 H H5 N N N 0 0.369 1.442 1.662
26 H6 H H6 N N N 0 2.804 1.134 1.849
27 H7 H H7 N N N 0 -3.377 1.953 -0.54
28 H8 H H8 N N N 0 -5.775 2.506 -0.626
29 H9 H H9 N N N 0 -7.454 0.791 -0.075
30 H10 H H10 N N N 0 -6.735 -1.477 0.56
31 H11 H H11 N N N 0 -4.337 -2.03 0.643
32 H12 H H12 N N N 0 -1.89 -1.624 -1.751