Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LDV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -1.399 0.219 0.465
2 C4 C C1 N N N 0 -2.546 0.877 1.103
3 C5 C C2 N N N 0 -1.837 -0.856 -0.435
4 C6 C C3 N N N 0 -2.7 -0.268 -1.553
5 C7 C C4 N N N 0 -0.455 -0.287 1.47
6 C8 C C5 N Y N 0 0.814 -0.731 0.79
7 C10 C C6 N Y N 0 2.868 -0.725 -0.232
8 C13 C C7 N Y N 0 3.294 2.018 -0.144
9 C15 C C8 N Y N 0 4.038 -0.184 -0.755
10 C1 C C9 N N N 0 -4.766 -0.586 -0.181
11 C11 C C10 N Y N 0 1.909 0.132 0.339
12 C12 C C11 N Y N 0 2.138 1.508 0.376
13 C14 C C12 N Y N 0 4.244 1.177 -0.708
14 C2 C C13 N N N 0 -3.914 0.434 -0.938
15 C3 C C14 N N N 0 -3.431 1.517 0.031
16 C9 C C15 N Y N 0 1.158 -1.993 0.486
17 N2 N N2 N Y N 0 2.381 -2.008 -0.126
18 H2 H H2 N N N 0 -3.125 0.139 1.659
19 H3 H H3 N N N 0 -2.189 1.648 1.786
20 H4 H H4 N N N 0 -0.964 -1.344 -0.869
21 H5 H H5 N N N 0 -2.419 -1.586 0.128
22 H6 H H6 N N N 0 -2.115 0.452 -2.125
23 H7 H H7 N N N 0 -3.038 -1.068 -2.211
24 H8 H H8 N N N 0 -0.227 0.504 2.185
25 H9 H H9 N N N 0 -0.902 -1.132 1.994
26 H10 H H10 N N N 0 3.47 3.083 -0.115
27 H11 H H11 N N N 0 4.784 -0.83 -1.196
28 H12 H H12 N N N 0 -4.17 -1.041 0.611
29 H13 H H13 N N N 0 -5.63 -0.086 0.257
30 H14 H H14 N N N 0 -5.105 -1.36 -0.87
31 H15 H H15 N N N 0 1.403 2.168 0.813
32 H16 H H16 N N N 0 5.153 1.595 -1.115
33 H17 H H17 N N N 0 -4.51 0.891 -1.728
34 H18 H H18 N N N 0 -4.291 1.992 0.504
35 H19 H H19 N N N 0 -2.857 2.265 -0.516
36 H20 H H20 N N N 0 0.557 -2.866 0.693
37 H21 H H21 N N N 0 2.839 -2.805 -0.437